MacKenzie-Graham, A., Tiwari-Woodruff, S. K., Sharma, G., Aguilar, C., Vo, K. T., Strickland, L. V., Morales, L., Fubara, B., Martin, M., Jacobs, R. E., Johnson, G. A., Toga, A. W., Voskuhl, R. R. (2009). Purkinje cell loss in experimental autoimmune encephalomyelitis. Neuroimage, 48(4), 637–651. https://doi.org/10.1016/j.neuroimage.2009.06.073

Howles, G. P., Ghaghada, K. B., Qi, Y., Mukundan, S., & Johnson, G. A. (2009). High-resolution magnetic resonance angiography in the mouse using a nanoparticle blood-pool contrast agent. Magn Reson Med, 62(6), 1447–1456. https://doi.org/10.1002/mrm.22154

Zhang, X., Badea, C. T., & Johnson, G. A. (2009). Three-dimensional reconstruction in free-space whole-body fluorescence tomography of mice using optically reconstructed surface and atlas anatomy. J Biomed Opt, 14(6), 064010. https://doi.org/10.1117/1.3258836

Lin, M., Marshall, C. T., Qi, Y., Johnston, S. M., Badea, C. T., Piantadosi, C. A., & Johnson, G. A. (2009). Quantitative blood flow measurements in the small animal cardiopulmonary system using digital subtraction angiography. Med Phys, 36(11), 5347–5358. https://doi.org/10.1118/1.3231823

Badea, A., Johnson, G. A., & Williams, R. W. (2009). Genetic dissection of the mouse CNS using magnetic resonance microscopy. Curr Opin Neurol, 22(4), 379–386. https://doi.org/10.1097/WCO.0b013e32832d9b86

Howles, G. P., Nouls, J. C., Qi, Y., & Johnson, G. A. (2009). Rapid production of specialized animal handling devices using computer-aided design and solid freeform fabrication. J Magn Reson Imaging, 30(2), 466–471. https://doi.org/10.1002/jmri.21821

Parnell, S. E., O’Leary-Moore, S. K., Godin, E. A., Dehart, D. B., Johnson, B. W., Johnson, G. A., Styner, M., Sulik, K. K. (2009). Magnetic resonance microscopy defines ethanol-induced brain abnormalities in prenatal mice: effects of acute insult on gestational day 8. Alcohol Clin Exp Res, 33(6), 1001–1011. https://doi.org/10.1111/j.1530-0277.2009.00921.x

Badea, A., Johnson, G. A., & Williams, R. W. (2009). Genetic dissection of the mouse brain using high-field magnetic resonance microscopy. Neuroimage, 45(4), 1067–1079. https://doi.org/10.1016/j.neuroimage.2009.01.021

Song, J., Liu, Y., Gewalt, S. L., Cofer, G., Johnson, G. A., & Liu, Q. H. (2009). Least-square NUFFT methods applied to 2-D and 3-D radially encoded MR image reconstruction. Ieee Trans Biomed Eng, 56(4), 1134–1142. https://doi.org/10.1109/TBME.2009.2012721

Badea, C. T., Drangova, M., Holdsworth, D. W., & Johnson, G. A. (2008). In vivo small-animal imaging using micro-CT and digital subtraction angiography. Phys Med Biol, 53(19), R319–R350. https://doi.org/10.1088/0031-9155/53/19/R01

Petiet, A. E., Kaufman, M. H., Goddeeris, M. M., Brandenburg, J., Elmore, S. A., & Johnson, G. A. (2008). High-resolution magnetic resonance histology of the embryonic and neonatal mouse: a 4D atlas and morphologic database. Proc Natl Acad Sci U S A, 105(34), 12331–12336. https://doi.org/10.1073/pnas.0805747105

Shofer, S., Badea, C., Qi, Y., Potts, E., Foster, W. M., & Johnson, G. A. (2008). A micro-CT analysis of murine lung recruitment in bleomycin-induced lung injury. J Appl Physiol (1985), 105(2), 669–677. https://doi.org/10.1152/japplphysiol.00980.2007

De Lin, M., Toncheva, G., Nguyen, G., Kim, S., Anderson-Evans, C., Johnson, G. A., & Yoshizumi, T. T. (2008). Application of MOSFET detectors for dosimetry in small animal radiography using short exposure times. Radiat Res, 170(2), 260–263. https://doi.org/10.1667/RR1328.1

Johnson, K., Badea, C., Hedlund, L., & Johnson, G. A. (2008). Imaging techniques for small animal imaging models of pulmonary disease: Micro-CT (Toxicologic Pathology (2007) 35, 5 (9-64)). Toxicologic Pathology, 36(6). https://doi.org/10.1177/0192623308323921

Bucholz, E., Ghaghada, K., Qi, Y., Mukundan, S., & Johnson, G. A. (2008). Four-dimensional MR microscopy of the mouse heart using radial acquisition and liposomal gadolinium contrast agent. Magn Reson Med, 60(1), 111–118. https://doi.org/10.1002/mrm.21618

Johnston, S. M., Johnson, G. A., & Badea, C. T. (2008). Geometric calibration for a dual tube/detector micro-CT system. Med Phys, 35(5), 1820–1829. https://doi.org/10.1118/1.2900000

Nouls, J. C., Izenson, M. G., Greeley, H. P., & Johnson, G. A. (2008). Design of a superconducting volume coil for magnetic resonance microscopy of the mouse brain. J Magn Reson, 191(2), 231–238. https://doi.org/10.1016/j.jmr.2007.12.018

Badea, C. T., Wetzel, A. W., Mistry, N., Pomerantz, S., Nave, D., & Johnson, G. A. (2008). Left ventricle volume measurements in cardiac micro-CT: the impact of radiation dose and contrast agent. Comput Med Imaging Graph, 32(3), 239–250. https://doi.org/10.1016/j.compmedimag.2007.12.004

Goddeeris, M. M., Rho, S., Petiet, A., Davenport, C. L., Johnson, G. A., Meyers, E. N., & Klingensmith, J. (2008). Intracardiac septation requires hedgehog-dependent cellular contributions from outside the heart. Development, 135(10), 1887–1895. https://doi.org/10.1242/dev.016147

Oldham, M., Sakhalkar, H., Oliver, T., Allan Johnson, G., & Dewhirst, M. (2008). Optical clearing of unsectioned specimens for three-dimensional imaging via optical transmission and emission tomography. J Biomed Opt, 13(2), 021113. https://doi.org/10.1117/1.2907968

de Lin, M., Ning, L., Badea, C. T., Mistry, N. N., Qi, Y., & Johnson, G. A. (2008). A high-precision contrast injector for small animal x-ray digital subtraction angiography. Ieee Trans Biomed Eng, 55(3), 1082–1091. https://doi.org/10.1109/TBME.2007.909541

Bucholz, E. K., Song, J., Johnson, G. A., & Hancu, I. (2008). Multispectral imaging with three-dimensional rosette trajectories. Magn Reson Med, 59(3), 581–589. https://doi.org/10.1002/mrm.21551

Mistry, N. N., Pollaro, J., Song, J., De Lin, M., & Johnson, G. A. (2008). Pulmonary perfusion imaging in the rodent lung using dynamic contrast-enhanced MRI. Magn Reson Med, 59(2), 289–297. https://doi.org/10.1002/mrm.21353

Sharief, A. A., Badea, A., Dale, A. M., & Johnson, G. A. (2008). Automated segmentation of the actively stained mouse brain using multi-spectral MR microscopy. Neuroimage, 39(1), 136–145. https://doi.org/10.1016/j.neuroimage.2007.08.028

Driehuys, B., Walker, J., Pollaro, J., Cofer, G. P., Mistry, N., Schwartz, D., & Johnson, G. A. (2007). 3He MRI in mouse models of asthma. Magn Reson Med, 58(5), 893–900. https://doi.org/10.1002/mrm.21306

Song, J., Liu, Q. H., Johnson, G. A., & Badea, C. T. (2007). Sparseness prior based iterative image reconstruction for retrospectively gated cardiac micro-CT. Med Phys, 34(11), 4476–4483. https://doi.org/10.1118/1.2795830

Badea, A., Ali-Sharief, A. A., & Johnson, G. A. (2007). Morphometric analysis of the C57BL/6J mouse brain. Neuroimage, 37(3), 683–693. https://doi.org/10.1016/j.neuroimage.2007.05.046

Johnson, G. A., Ali-Sharief, A., Badea, A., Brandenburg, J., Cofer, G., Fubara, B., Gewalt, S., Hedlund, L.W., Upchurch, L. (2007). High-throughput morphologic phenotyping of the mouse brain with magnetic resonance histology. Neuroimage, 37(1), 82–89. https://doi.org/10.1016/j.neuroimage.2007.05.013

Badea, C. T., Hedlund, L. W., Mackel, J. F. B., Mao, L., Rockman, H. A., & Johnson, G. A. (2007). Cardiac micro-computed tomography for morphological and functional phenotyping of muscle LIM protein null mice. Molecular Imaging, 6(4), 261–268. https://doi.org/10.2310/7290.2007.00022

Nahrendorf, M., Badea, C., Hedlund, L. W., Figueiredo, J.-L., Sosnovik, D. E., Johnson, G. A., & Weissleder, R. (2007). High-resolution imaging of murine myocardial infarction with delayed-enhancement cine micro-CT. Am J Physiol Heart Circ Physiol, 292(6), H3172–H3178. https://doi.org/10.1152/ajpheart.01307.2006