The effects of mechanical loading and gadolinium concentration on the change of T1 and quantification of glycosaminoglycans in articular cartilage by microscopic MRI

Wang, Nian, Edith Chopin, and Yang Xia. “The effects of mechanical loading and gadolinium concentration on the change of T1 and quantification of glycosaminoglycans in articular cartilage by microscopic MRI.” Phys Med Biol 58, no. 13 (July 7, 2013): 4535–47. https://doi.org/10.1088/0031-9155/58/13/4535

High-Resolution Neuroimaging Reveals a Range of Corpus Callosum Insult Induced by Ethanol on Gestational Day 7 in Mice

O’Leary-Moore, S. K., Budin, F., Paniagua, B., Oguz, I., Johnson, G. A., & Sulik, K. K. (2013). High-Resolution Neuroimaging Reveals a Range of Corpus Callosum Insult Induced by Ethanol on Gestational Day 7 in Mice. Alcoholism Clinical and Experimental Research, 37, 167A-167A. https://phy.duke.edu/high-resolution-neuroimaging-reveals-range-corpus-callosum-insult-induced-ethanol-gestational-day-7

Altered diffusion tensor imaging measurements in aged transgenic Huntington disease rats

Antonsen, B. T., Jiang, Y., Veraart, J., Qu, H., Nguyen, H. P., Sijbers, J., von Hörsten, S., Johnson, G. A., Leergaard, T. B. (2013). Altered diffusion tensor imaging measurements in aged transgenic Huntington disease rats. Brain Structure and Function, 218(3), 767–778. https://doi.org/10.1007/s00429-012-0427-0

A quantitative magnetic resonance histology atlas of postnatal rat brain development with regional estimates of growth and variability

Calabrese, E., Badea, A., Watson, C., & Johnson, G. A. (2013). A quantitative magnetic resonance histology atlas of postnatal rat brain development with regional estimates of growth and variability. Neuroimage, 71, 196–206. https://doi.org/10.1016/j.neuroimage.2013.01.017

The utility of micro-CT and MRI in the assessment of longitudinal growth of liver metastases in a preclinical model of colon carcinoma

Pandit, P., Johnston, S. M., Qi, Y., Story, J., Nelson, R., & Johnson, G. A. (2013). The utility of micro-CT and MRI in the assessment of longitudinal growth of liver metastases in a preclinical model of colon carcinoma. Acad Radiol, 20(4), 430–439. https://doi.org/10.1016/j.acra.2012.09.030

Dual-energy micro-computed tomography imaging of radiation-induced vascular changes in primary mouse sarcomas

Moding, E. J., Clark, D. P., Qi, Y., Li, Y., Ma, Y., Ghaghada, K., Johnson, G. A., Kirsch, D. G., Badea, C. T. (2013). Dual-energy micro-computed tomography imaging of radiation-induced vascular changes in primary mouse sarcomas. Int J Radiat Oncol Biol Phys, 85(5), 1353–1359. https://doi.org/10.1016/j.ijrobp.2012.09.027

Constructing a 4D murine cardiac micro-CT atlas for automated segmentation and phenotyping applications

Clark, D., Badea, A., Johnson, G. A., & Badea, C. T. (2013). Constructing a 4D murine cardiac micro-CT atlas for automated segmentation and phenotyping applications. Progress in Biomedical Optics and Imaging Proceedings of Spie, 8669. https://doi.org/10.1117/12.2007043

A LabVIEW Platform for Preclinical Imaging Using Digital Subtraction Angiography and Micro-CT

Badea, C. T., Hedlund, L. W., & Johnson, G. A. (2013). A LabVIEW Platform for Preclinical Imaging Using Digital Subtraction Angiography and Micro-CT. J Med Eng, 2013, 581617. https://doi.org/10.1155/2013/581617

An ontology-based segmentation scheme for tracking postnatal changes in the developing rodent brain with MRI

Calabrese, E., Johnson, G. A., & Watson, C. (2013). An ontology-based segmentation scheme for tracking postnatal changes in the developing rodent brain with MRI. Neuroimage, 67, 375–384. https://doi.org/10.1016/j.neuroimage.2012.11.037

Dual-energy computed tomography imaging of atherosclerotic plaques in a mouse model using a liposomal-iodine nanoparticle contrast agent

Bhavane, R., Badea, C., Ghaghada, K. B., Clark, D., Vela, D., Moturu, A., Annapragada, A., Johnson, G. A., Willerson, J. T., Annapragada, A. (2013). Dual-energy computed tomography imaging of atherosclerotic plaques in a mouse model using a liposomal-iodine nanoparticle contrast agent. Circ Cardiovasc Imaging, 6(2), 285–294. https://doi.org/10.1161/CIRCIMAGING.112.000119

Magnetic resonance microscopy

Badea, A., & Johnson, G. A. (2013). Magnetic resonance microscopy. Stud Health Technol Inform, 185, 153–184. http://ebooks.iospress.nl/publication/32742

A comparison of radial keyhole strategies for high spatial and temporal resolution 4D contrast-enhanced MRI in small animal tumor models

Subashi, E., Moding, E. J., Cofer, G. P., MacFall, J. R., Kirsch, D. G., Qi, Y., & Johnson, G. A. (2013). A comparison of radial keyhole strategies for high spatial and temporal resolution 4D contrast-enhanced MRI in small animal tumor models. Med Phys, 40(2), 022304. https://doi.org/10.1118/1.4774050

Quantitative mouse brain phenotyping based on single and multispectral MR protocols

Badea, A., Gewalt, S., Avants, B. B., Cook, J. J., & Johnson, G. A. (2012). Quantitative mouse brain phenotyping based on single and multispectral MR protocols. Neuroimage, 63(3), 1633–1645. https://doi.org/10.1016/j.neuroimage.2012.07.021

Registration-based segmentation of murine 4D cardiac micro-CT data using symmetric normalization

Clark, D., Badea, A., Liu, Y., Johnson, G. A., & Badea, C. T. (2012). Registration-based segmentation of murine 4D cardiac micro-CT data using symmetric normalization. Phys Med Biol, 57(19), 6125–6145. https://doi.org/10.1088/0031-9155/57/19/6125

A multidimensional magnetic resonance histology atlas of the Wistar rat brain

Johnson, G. A., Calabrese, E., Badea, A., Paxinos, G., & Watson, C. (2012). A multidimensional magnetic resonance histology atlas of the Wistar rat brain. Neuroimage, 62(3), 1848–1856. https://doi.org/10.1016/j.neuroimage.2012.05.041

Ethanol-induced face-brain dysmorphology patterns are correlative and exposure-stage dependent

Lipinski, R. J., Hammond, P., O’Leary-Moore, S. K., Ament, J. J., Pecevich, S. J., Jiang, Y., Budin, F., Parnell, S. E., Suttie, M., Godin, E. A., Everson, J. L., Dehart, D. B., Oguz, I., Holloway, H. T., Styner, M. A., Johnson, G. A., Sulik, K. K. (2012). Ethanol-induced face-brain dysmorphology patterns are correlative and exposure-stage dependent. Plos One, 7(8), e43067. https://doi.org/10.1371/journal.pone.0043067

Orientational dependent sensitivities of T2 and T1ρ towards trypsin degradation and Gd-DTPA2- presence in bovine nasal cartilage

Wang, Nian, and Yang Xia. “Orientational dependent sensitivities of T2 and T1ρ towards trypsin degradation and Gd-DTPA2- presence in bovine nasal cartilage.” Magma 25, no. 4 (August 2012): 297–304. https://doi.org/10.1007/s10334-011-0288-1

Temporal and spectral imaging with micro-CT

Johnston, S. M., Johnson, G. A., & Badea, C. T. (2012). Temporal and spectral imaging with micro-CT. Med Phys, 39(8), 4943–4958. https://doi.org/10.1118/1.4736809

Functional neuroimaging using ultrasonic blood-brain barrier disruption and manganese-enhanced MRI

Howles, G. P., Qi, Y., Rosenzweig, S. J., Nightingale, K. R., & Johnson, G. A. (2012). Functional neuroimaging using ultrasonic blood-brain barrier disruption and manganese-enhanced MRI. J Vis Exp, (65), e4055. https://doi.org/10.3791/4055

Magnetic resonance histology of age-related nephropathy in the Sprague Dawley rat

Xie, L., Cianciolo, R. E., Hulette, B., Lee, H. W., Qi, Y., Cofer, G., & Johnson, G. A. (2012). Magnetic resonance histology of age-related nephropathy in the Sprague Dawley rat. Toxicol Pathol, 40(5), 764–778. https://doi.org/10.1177/0192623312441408

Diffusion Tensor Imaging (DTI)-Based Analysis of Fiber Tract Abnormalities in a Mouse Model of Prenatal Alcohol Exposure

O’Leary-Moore, S. K., Johnson, G. A., Calabrese, E., Budin, F., Oguz, I., Styner, M. A., Parnell, S. E., Sulik, K. K. (2012). Diffusion Tensor Imaging (DTI)-Based Analysis of Fiber Tract Abnormalities in a Mouse Model of Prenatal Alcohol Exposure. Alcoholism Clinical and Experimental Research, 36, 312A-312A. https://phy.duke.edu/diffusion-tensor-imaging-dti-based-analysis-fiber-tract-abnormalities-mouse-model-prenatal-alcohol

Computed tomography imaging of primary lung cancer in mice using a liposomal-iodinated contrast agent

Badea, C. T., Athreya, K. K., Espinosa, G., Clark, D., Ghafoori, A. P., Li, Y., Kirsch, D. G., Johnson, G. A., Annapragada, A., Ghaghada, K. B. (2012). Computed tomography imaging of primary lung cancer in mice using a liposomal-iodinated contrast agent. Plos One, 7(4), e34496. https://doi.org/10.1371/journal.pone.0034496

Depth and orientational dependencies of MRI T(2) and T(1ρ) sensitivities towards trypsin degradation and Gd-DTPA(2-) presence in articular cartilage at microscopic resolution

Wang, Nian, and Yang Xia. “Depth and orientational dependencies of MRI T(2) and T(1ρ) sensitivities towards trypsin degradation and Gd-DTPA(2-) presence in articular cartilage at microscopic resolution.” Magn Reson Imaging 30, no. 3 (April 2012): 361–70. https://doi.org/10.1016/j.mri.2011.10.004

Plants, seeds, roots, and soils as applications of magnetic resonance microscopy

Macfall, J. S., & Johnson, G. A. (2012). Plants, seeds, roots, and soils as applications of magnetic resonance microscopy. Emagres, 1(1), 147–154. https://doi.org/10.1002/9780470034590.emrstm0396

Morphological studies of the murine heart based on probabilistic and statistical atlases

Perperidis, D., Bucholz, E., Johnson, G. A., & Constantinides, C. (2012). Morphological studies of the murine heart based on probabilistic and statistical atlases. Comput Med Imaging Graph, 36(2), 119–129. https://doi.org/10.1016/j.compmedimag.2011.07.001

3D fiber tractography with susceptibility tensor imaging

Liu, C., Li, W., Wu, B., Jiang, Y., & Johnson, G. A. (2012). 3D fiber tractography with susceptibility tensor imaging. Neuroimage, 59(2), 1290–1298. https://doi.org/10.1016/j.neuroimage.2011.07.096

4D micro-CT using fast prospective gating

Guo, X., Johnston, S. M., Qi, Y., Johnson, G. A., & Badea, C. T. (2012). 4D micro-CT using fast prospective gating. Phys Med Biol, 57(1), 257–271. https://doi.org/10.1088/0031-9155/57/1/257

Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain

Veraart, J., Leergaard, T. B., Antonsen, B. T., Van Hecke, W., Blockx, I., Jeurissen, B., Jiang, Y., Van der Linden, A., Johnson, G. A., Verhoye, M., Sijbers, J. (2011). Population-averaged diffusion tensor imaging atlas of the Sprague Dawley rat brain. Neuroimage, 58(4), 975–983. https://doi.org/10.1016/j.neuroimage.2011.06.063

Phenylephrine-modulated cardiopulmonary blood flow measured with use of X-ray digital subtraction angiography

Lin, M., Qi, Y., Chen, A. F., Badea, C. T., & Johnson, G. A. (2011). Phenylephrine-modulated cardiopulmonary blood flow measured with use of X-ray digital subtraction angiography. J Pharmacol Toxicol Methods, 64(2), 180–186. https://doi.org/10.1016/j.vascn.2011.08.001

In vivo imaging of rat coronary arteries using bi-plane digital subtraction angiography

Badea, C. T., Hedlund, L. W., Qi, Y., Berridge, B., & Johnson, G. A. (2011). In vivo imaging of rat coronary arteries using bi-plane digital subtraction angiography. J Pharmacol Toxicol Methods, 64(2), 151–157. https://doi.org/10.1016/j.vascn.2011.05.008

High-resolution reconstruction of fluorescent inclusions in mouse thorax using anatomically guided sampling and parallel Monte Carlo computing

Zhang, X., Badea, C., Hood, G., Wetzel, A., Qi, Y., Stiles, J., & Johnson, G. A. (2011). High-resolution reconstruction of fluorescent inclusions in mouse thorax using anatomically guided sampling and parallel Monte Carlo computing. Biomed Opt Express, 2(9), 2449–2460. https://doi.org/10.1364/BOE.2.002449

Dependencies of multi-component T2 and T1ρ relaxation on the anisotropy of collagen fibrils in bovine nasal cartilage

Wang, Nian, and Yang Xia. “Dependencies of multi-component T2 and T1ρ relaxation on the anisotropy of collagen fibrils in bovine nasal cartilage.” J Magn Reson 212, no. 1 (September 2011): 124–32. https://doi.org/10.1016/j.jmr.2011.06.031

Strain-dependent T1 relaxation profiles in articular cartilage by MRI at microscopic resolutions

Xia, Yang, Nian Wang, Jihyun Lee, and Farid Badar. “Strain-dependent T1 relaxation profiles in articular cartilage by MRI at microscopic resolutions.” Magn Reson Med 65, no. 6 (June 2011): 1733–37. https://doi.org/10.1002/mrm.22933

Microscopic diffusion tensor atlas of the mouse brain

Jiang, Y., & Johnson, G. A. (2011). Microscopic diffusion tensor atlas of the mouse brain. Neuroimage, 56(3), 1235–1243. https://doi.org/10.1016/j.neuroimage.2011.03.031

High-field (9.4 T) MRI of brain dysmyelination by quantitative mapping of magnetic susceptibility

Liu, C., Li, W., Johnson, G. A., & Wu, B. (2011). High-field (9.4 T) MRI of brain dysmyelination by quantitative mapping of magnetic susceptibility. Neuroimage, 56(3), 930–938. https://doi.org/10.1016/j.neuroimage.2011.02.024

4D micro-CT for cardiac and perfusion applications with view under sampling

Badea, C. T., Johnston, S. M., Qi, Y., & Johnson, G. A. (2011). 4D micro-CT for cardiac and perfusion applications with view under sampling. Phys Med Biol, 56(11), 3351–3369. https://doi.org/10.1088/0031-9155/56/11/011

Beta-Arrestins Regulate Signaling by Bone Morphogenetic Protein Type II Receptor in Pulmonary Arterial Hypertension

Rajagopal, S., Kovacs, J., Badea, C., Johnson, G. A., Rockman, H. A., Piantadosi, C. A., & Lefkowitz, R. J. (2011). Beta-Arrestins Regulate Signaling by Bone Morphogenetic Protein Type II Receptor in Pulmonary Arterial Hypertension. Journal of the American College of Cardiology, 57(14), E2046–E2046. https://doi.org/10.1016/s0735-1097(11)62046-9

A symmetrical Waxholm canonical mouse brain for NeuroMaps

Bowden, D. M., Johnson, G. A., Zaborsky, L., Green, W. D. K., Moore, E., Badea, A., Dubach, M. F., Bookstein, F. L. (2011). A symmetrical Waxholm canonical mouse brain for NeuroMaps. J Neurosci Methods, 195(2), 170–175. https://doi.org/10.1016/j.jneumeth.2010.11.028

Digital atlasing and standardization in the mouse brain

Hawrylycz, M., Baldock, R. A., Burger, A., Hashikawa, T., Johnson, G. A., Martone, M., Ng, L., Lau, C., Larsen, S. D., Nissanov, J., Puelles, L., Ruffins, S., Verbeek, F., Zaslavsky, I., Boline, J. (2011). Digital atlasing and standardization in the mouse brain. Plos Comput Biol, 7(2), e1001065. https://doi.org/10.1371/journal.pcbi.1001065

Reduction of artifacts in T2 -weighted PROPELLER in high-field preclinical imaging

Pandit, P., Qi, Y., King, K. F., & Johnson, G. A. (2011). Reduction of artifacts in T2 -weighted PROPELLER in high-field preclinical imaging. Magn Reson Med, 65(2), 538–543. https://doi.org/10.1002/mrm.22624