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Shared Code Access

License disclaimer
Unless othewise noted our software is released under the GPL
    This program is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.
    
We provide support at our discretion. Look at our collaboration and service web page for information about working with us.

Notable Code available from CIVM

To assemble functional copy of code it is best to download setup project.
Name Supplement paper link or Description Repository directory
MOuse Brain Segmentation pipeline(MOBS) Quantitative mouse brain phenotyping based on single and multispectral MR protocols.(Includes copy of source code in use at time of publication.) main_seg_code
Pipeline Utilities Perl library of support functions for pipelines. perl_shared_library
Shell script library Library of short bash shell scripts to help manage code and/or Apple computers. bash_shared_library
MATLAB Framework for Non-Cartesean Reconstruction Optimized 3D Non-Cartesian Gridding Reconstruction for Hyperpolarized 129Xe MRI: Focus on Preclinical Applications Non-Cartesian-Reconstruction
workstation code setup project on github
For assistance please contact James Cook
(jjc29 at duke dot edu)

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