<-- -->
Home facilities research publications collaboration training staff shareddata sharedcode about contact
only search CIVM


For more information, email the Center.


journal articles/books: 2017 2016 2015 2014 2013 2012 2011 2010 2009 2008 2007  2006  2005 2004 2003 2002 2001 2000 1999 1998  1997  pre-1997 publications

These publications are associated with our faculty, students, collaborations, and resulting from shared data or figures. Contact for copies or other information. If appropriate, NIH PubMedCentral (PMCID) links are provided. Availability from journals or DOI may be limited by institutional access. Check pubs that include data supplements or see compiled LIST OF SHARED DATA.

Data downloaded from this site is for academic use only. If you use this data in a publication please send us a request
for copyright permission and appropriate acknowledgements. Licenses can be granted for commercial use.
Contact the Center for permission.

2010 2017

R Dibb, L Xie, H Wei, C Liu, Magnetic susceptibility anisotropy outside the central nervous system, NMR Biomed. 2017 Apr;30(4). PMCID: PMC5112155

B Driehuys, Crossing the chasm(s): demonstrating the clinical value of hyperpolarized gas MRI, Guest Editorial, Academic Radiology 2017 Jan;24(1):1-3.

DP Clark, CT Badea, Low-dose, 4D myocardial perfusion with x-ray micro-CT (poste) Proc SPIE Medical Imaging, Feb 11-16, 2017, Orlando FL

DP Clark, CT Badea, A data-driven regularization strategy for statistical CT reconstruction (poster) Proc SPIE Medical Imaging, Feb 11-16, 2017, Orlando FL

L Ebner, J Kammerman, B Driehuys, ML Schiebler,RV Cadman,SB. Fain, The role of hyperpolarized 129xenon in MR imaging of pulmonary function, Eur J Radiol. 2017 Jan; 86:343-352. PMCID: PMC5195899

L Ebner, M He, RS Virgincar, T Heacock, SS Kaushik, MS Freemann, HP McAdams, M Kraft, B Driehuys, Hyperpolarized 129Xenon magnetic resonance imaging to quantify regional ventilation differences in mild to moderate asthma: a prospective comparison between semiautomated ventilation defect percentage calculation and pulmonary function tests. Invest Radiol 2017 Feb;52(2):120-127.

GD Graña, KA Hutson, A Badea, A Pappa, W Scott, DC Fitzpatrick, The organization of frequency and binaural cues in the gerbil inferior colliculus, Journal of Comparative Neurology, 2016 Dec 20. doi: 10.1002/cne.24155. [Epub ] NIHMSID: 850900

JS House, CE Nichols, H Li, C Brandenberger, RS Virgincar, L Miller, B Driehuys, DC. Zeldin, SJ London, Vagal innervation is required for pulmonary function phenotype in Htr4-/- mice, Am J Physiol Lung Cell Mol Physiol.2017 Apr 1;312(4):L520-L530, NIHMSID: 860402

W Li, C Liu, TQ Duong, PCM van Zijle, X Lie, Susceptibility tensor imaging (STI) of the brain, NMR in Biomedicine, NMR Biomed. 2017 Apr;30(4). PMCID: PMC5083244

K Mahmood, L Ebner, M He, SH Robertson, Z Wang, HP McAdams, MM Wahidi, SL Shofer, YT Huang, B Driehuys. Novel magnetic resonance imaging for assessment of bronchial stenosis in lung transplant recipients. Am J Transplant. 2017 Mar 29. doi: 10.1111/ajt.14287. [Epub]

FE Robles, S Deb, MC Fischer, WS Warren, MA Selim. Label-free imaging of female genital tract melanocytic lesions with pump-probe microscopy: a promising diagnostic tool. J Low Genit Tract Dis. 2017 Feb 3. [Epub ahead of print]

R Vetreno, R Yaxley, B Paniagua, GA Johnson, FT Crews, Adult rat cortical thickness changes across age and following adolescent intermittent ethanol treatment, Addiction Biology, 2017; 22(3):712-723. PMCID: PMC4969224

RS Virgincar, SH Robertson, J Nouls, S Degan, G Schrank, M He, B Driehuys, Establishing an accurate gas phase reference frequency to quantify 129Xe chemical shifts in vivo, Magn Reson Med 2017 Apr;77(4):1438-1445. PMCID: PMC50052090

Z Wang, SH Robertson, J Wang, M He, RH Virgincar, G Schrank, E Bier, M He, S Rajagopal, YT Huang, T O'Riordan, C Rackley, HP McAdams, B Driehuys. Quantitative analysis of hyperpolarized 129Xe gas transfer MRI. Med Phys 2017 Apr 6. doi: 10.1002/mp.12264. [Epub]


CT Badea. Chapt 3.7: Small animal X-ray Computed Tomography, in Handbook of X-ray Imaging: Physics and Technology, Ed: P Russo, Taylor & Francis, ISBN: 978 1-4987-4152-1, in press 2017

M He, SH Robertson, SS Kaushik, MS Freeman, RS Virgincar, J Davies, J Stiles, WM Foster, HP McAdams, B Driehuys, Regional ventilation analysis comparing multi-slice gradient echo and isotropic 3D-radial acquisition using low- and high- dose equivalents of hyperpolarized 129Xe in non-smoking older volunteers. JMRI, in press 2017

2010 2016

A Badea, L Kane, RJ Anderson, Yi Qi, et al.,The fornix provides multiple biomarkers to characterize circuit disruption in a mouse model of Alzheimer's disease, Neuroimage. 2016 Nov 15;142:498-511. PMCID: PMC5159324

SL Bhagat, S Qiu, ZF Caffall, Y Wan, Y Pan, RM Rodriguiz, WC Wetsel, A Badea, U Hochgeschwender, N Calakos, Mouse model of rare TOR1A variant found in sporadic focal dystonia impairs domains affected in DYT1 dystonia patients and animal models, Neurobiol of Disease 93:137-145, 2016. PMCID:PMC4939622

B Bilgic, L Xie, R Dibb, C Langkammera, . . . C Liu, et al., Rapid multi-orientation quantitative susceptibility mapping, Neuroimage 2016 Jan 15;125:1131-1141. PMCID: PMC4691433

E Calabrese, Diffusion tractography in deep brain stimulation surgery: a review, Frontiers in Neuroanatomy, published: 02 May 2016, doi: 10.3389/fnana.2016.00045 PMCID: PMC4852260

T Dahhan, SS Kaushik, M He, JG Mammarappallil, VF Tapson, HP McAdams, TA Sporn, B Driehuys, S Rajagopal, Abnormalities in hyperpolarized 129Xe magnetic resonance imaging and spectroscopy in two patients with pulmonary vascular disease. Pulmonary Circulation 2016 Mar;6(1):126-31. PMCID: PMC4860552

R Dibb, C Liu, Joint eigenvector estimation from mutually anisotropic tensors improves susceptibility tensor imaging of the brain, kidney, and heart. Magn Reson Med 2016 Jul 6. doi: 10.1002/mrm.26321. [Epub]

EW Fish, HT Holloway, A Rumple, LK Baker, LA Wieczorek, SS Moy, B Paniagua, SE Parnell, Acute alcohol exposure during neurulation: Behavioral and brain structural consequences in adolescent C57BL/6J mice. Behav Brain Res. 2016 Sep 15;311:70-80. PMCID: PMC4931949

MC Fischer, JW Wilson, FE Robles, WS Warren, Invited Review: Pump-probe microscopy, AIP Review of Scientific Instruments 87(3): 031101, 2016. PMCID: PMC4798998

(credits to CIVM): E Gibbs, C Liu: Feasibility of imaging tissue electrical conductivity by switching field gradients with MRI, Tomography 2015 Dec 1(2): 125-135. PMCID: PMC4734905

M He, B Driehuys, LG Que, Y-C T Huang, Using hyperpolarized 129Xe MRI to quantify the pulmonary ventilation distribution, Acad Radiol 2016 Dec;23(12):1521-1531. NIHMSID: 859053

M Inoue, P Chen, S Siecinski, Q Li, C Liu, L Steinman, SG Gregory, E Benner, ML Shinohara, An interferon-β-resistant and NLRP3 inflammasome-independent subtype of EAE with neuronal damage. Nature Neuroscience 2016;19(12):1599-1609. NIHMSID 858939

S Spiliopoulos, GC Kagadis, D Karnabatidis, GA Johnson, CT Badea, Chapter 7: Digital Subtracted Angiography of Small Animals, in Handbook of Small Animal Imaging: Preclinical Imaging, Therapy, and Applications (Ed: GC Kagadis, et al.) Taylor and Francis, 2016.

E Subashi, F Cordero, KG Halvorson, Y Qi, OJ Becher, GA Johnson, Tumor location and histone H3.3K27M mutation significantly influences the blood-brain barrier permeability in a genetic mouse model of pediatric high-grade glioma, J Neuro-Oncol 2016; 126(2):243-51. PMCID:PMC4720569

T Theis, GX Ortiz Jr.,AWJ Logan, . . . WS Warren, Direct and cost-efficient hyperpolarizatio of long-lived nuclear spin states on universal 15N2-diazirine molecular tags, Science Advances,2016: 2(3): e1501438, PMCID: PMC4820385

M Touch, DP Clark, W Barber, CT Badea, A neural network-based method for spectral distortion correction in photon counting x-ray CT. Phys Med Biol 61(16): 6132–6153, 2016. PMCID:PMC5056429

C Wang, E Subashi, F-F Yin, Z Chang, Dynamic fractal signature dissimilarity analysis for therapeutic response assessment using dynamic contrast-enhanced MRI, Medical Physics 43(3): 1335-1347, 2016, PMCID: PMC4760981

C Wang, E Subashi, X Liang, F-F Yin, Z Chang, Evaluation of the effect of transcytolemmal water exchange analysis for therapeutic response assessment using DCE-MRI: a comparison study. Phys Med Biol. 2016; 61(13):4763-4780. PMCID: PMC4929833

X Wang, AL Bey, BM Katz, A Badea, et al., Altered mGluR5-Homer scaffolds and neural connectivity in a Shank3 complete knockout model of autism, Nature Communications 2016 May 10;7:11459. PMCID: PMC4866051 Open access Duke news release

H Wei, L Xie, R Dibb, W Li, K Decker, Y Zhang, GA Johnson, C Liu, Imaging whole-brain cytoarchitecture of mouse with MRI-based quantitative susceptibility mapping, Neuroimage 137:107-15, 2016. PMCID: PMC5201162

L Xie, A Layton, N Wang, P Larson, J Zhang, V Lee, C Liu, GA Johnson, Dynamic contrast-enhanced quantitative susceptibility mapping with ultrashort echo time MRI for evaluating renal function, AJP-Renal Physiology, 310(2): F174-82, 2016. Supplement PMCID: PMC4719043

L Xie, K Bennett, C Liu, GA Johnson, et al, MRI tools for assessment of microstructure and nephron function of the kidney, (F-00134-2016R1), Am J Physiol Renal Physiol 2016; Dec311(6):F1109-F1124 PMCID: PMC5210196

Proc of SPIE Medical Imaging, Feb 27-March 1, 2016, San Diego CA

DP Clark, CT Badea, Resolution-enhancing, hybrid, spectral CT reconstruction (Vol 97834C)

DP Clark, CT Badea, Joint regularization for spectro-temporal CT reconstruction (Vol 97834E)

Keynote presentation: GA Johnson, R Anderson, E Calabrese, J Cook, C Long, A Badea, Image processing pipelines: applications in MR histology, (Vol 978407)

M Touch, DP Clark, W Barber, CT Badea, A novel approach to address spectral distortions in photon counting x-ray CT using artificial neural networks, (Vol 97835P)







SS Kaushik, SH Robertson, MS Freeman, et al., Single-breath clinical imaging of hyperpolarized 129Xe in the airspaces, barrier, and red blood cells using an interleaved 3D radial 1-point Dixon acquisition, Magn Reson Med 75(4): 1434-1443, 2016. PMCID: PMC4651856

Figure chosen for cover


DE Peterson, SD Chen, E Calabrese, LE White, JM Provenzale, Automated segmentation of the canine corpus callosum for the measurement of diffusion tensor imaging, Neurorad J (1):4-12, 2016. PMCID: PMC4978335


2010 2015

JR Ashton, JL West, CT Badea, In vivo small animal micro-CT using nanoparticle contrast agents, Frontiers in Pharmacology: Experimental Pharmacology and Drug Discovery 6 (article 256): 1-22, Nov 2015. PMCID: PMCID: PMC4631946 also available through open access

J Schaich Borg, M-A Vu, C Badea, A Badea, GA Johnson, K Dzirasa, Localization of metal electrodes in the intact rat brain using registration of 3-D micro-CT images to an MR histology atlas. eNeuro, 2015 Jul-Aug;2(4). Supplement PMCID:PMC4550316

E Calabrese, A Badea, G Cofer, Y Qi,GA Johnson, A diffusion MRI tractography connectome of the mouse brain and comparison with neuronal tracer data, Cerebral Cortex 2015 Nov;25(11):4628-37. PMCID: PMC4715247 Supplement Duke press release

E Calabrese, A Badea, CL Coe, GR Lubach, MA Styner, Y Shi, GA Johnson, A diffusion tensor MRI atlas of the postmortem rhesus macaque brain, Neuroimage 117: 408-416, 2015. PMCID:PMC4512905 Supplement

D Leong, E Calabrese, LE White, P Wei, S Chen, SR Platt, JM Provenzale, Correlation of diffusion tensor imaging parameters in the canine brain. Neuroradiol Journal, 2015 Feb;28(1):12-8. PMCID: PMC4757115 (CIVM consulting)

W Li, N Wang, F Yu, H Han, W Cao, R Romero, B Tantiwongkosi, TQ Duong, C Liu, A method for estimating and removing streaking artifacts in quantitative susceptibility mapping, NeuroImage 108:111-122, 2015. PMCID: PMC4406048

C Liu , W Li, KA Tong, KW Yeom, S Kuzminski, Susceptibility-weighted imaging and quantitative susceptibility mapping in the brain. J Magn Reson Imaging. 2015;42(1):23-41. PMCID:PMC4406874

Y Liu, JR Ashton, EJ Moding, H Yuan, JK Register, AM Fales, J Choi, MJ Whitley, X Zhao, Y Qi, Y Ma, G Vaidyanathan, MR Zalutsky, DG Kirsch, CT Badea, T Vo-Dinh, A plasmonic gold nanostar theranostic probe for in vivo tumor imaging and photothermal therapy, Theranostics 5(9): 946-960, 2015. PMCID:PMC4493533


E Calabrese, P Hickey, C Hulette, J Zhang, B Parente, SP Lad, GA Johnson, Postmortem diffusion MRI of the human brainstem and thalamus for deep brain stimulator electrode localization, Human Brain Mapping, 2015 36(8):3167-78. PMCID:PMC4652933

Duke press release


Figure chosen for issue cover

Y Liu, C Badea, N Mistry, W D’Souza, Influence of Image registration algorithms and noise levels on the accuracy of fractional regional ventilation, Medical Physics 42(6): 3198-3199, 2015

(CIVM data) MS McMurray, I Oguz, AM Rumple, B Paniagua, MA Styner, JM Johns, Effects of prenatal cocaine exposure on early postnatal rodent brain structure and diffusion properties. Neurotoxicol Teratol 2015 47:80-8. PMCID: PMC4291294

EA Papp, TB Leergaard, E Calabrese, GA Johnson,JG Bjaalie, Addendum to “Waxholm Space atlas of the Sprague Dawley rat brain” [refers to NeuroImage 97:374-386, 2014], Neuroimage 105 561-562, 2015. PMCID:PMC4398658

G Paxinos, C Watson, E Calabrese, A Badea, GA Johnson, An MRI/DTI Atlas of the Rat Brain, Academic Press, Elsevier, August 2015. ISBN: 978-0-12-417313-2, 224 pp

JM Provenzale, I Nestrasil, S Chen, et al., Diffusion tensor imaging and myelin composition analysis reveal abnormal myelination in corpus callosum of canine mucopolysaccharidosis I, Exper Neurol 273:1-10, 2015. PMCID: PMC4644459

SH Robertson, RS Virgincar, M He, MS Freeman, SS Kaushik, B Driehuys, Optimized 3D noncartesian gridding reconstruction for hyperpolarized 129Xe MRI – focus on preclinical applications, Concepts in Magnetic Resonance Part A, 44(4): 190-202, 2015. Supplement

J Choi, P Dickson, E Calabrese E, S Chen, L White, M Ellingwood,JM Provenzale. Predicting degree of myelination based on diffusion tensor imaging of canines with mucopolysaccharidosis type I. Neuroradiol J 2015;28(6):562-73. PMCID: PMC4757141

DP Clark, C-L Lee, DG Kirsch, CT Badea: Spectro-temporal CT data acquisition and reconstruction at low dose, Medical Physics 42: 6317-6336, 2015. PMCID: PMC4600087

FE Robles, S Deb, JW Wilson, CS Gainey, MA Selim, PJ Mosca, DS Tyler, MC Fischer, WS Warren, Pump-probe imaging of pigmented cutaneous melanoma primary lesions gives insight into metastatic potential, Biomedical Optics Express 6(9): 3631-3645, 2015. PMCID: PMC4574685

JE Roos, HP McAdams, SS Kaushik, B Driehuys, Hyperpolarized gas MRI: technique and applications, Magn Reson Imag Clinics N America, 23(2): 217-229, 2015. PMCID:PMC4428591

E Subashi, Y Qi, GA Johnson, Dynamic contrast-enhanced MR microscopy identifies regions of therapeutic response in a preclinical model of colorectal adenocarcinoma, Med Phys 42(5): 2482-2488, 2015. PMCID:PMC4409627

S Spiliopoulos, GC Kagadis, D Karnabatidis, GA ohnson,CT Badea, Chapt 6: Digital Subtracted Angiography of Small Animals, in Handbook of Small Animal Imaging: Preclinical Imaging, Therapy, and Applications, pp 67-76, CRC Press, ISBN-13: 978-1466555686 602 pp, 2016

H Wei , R Dibb , Y Zhou, Y Sun, J Xu , N Wang , C Liu. Streaking artifact reduction for quantitative susceptibility mapping of sources with large dynamic range. NMR Biomed. 2015;28(10):1294-1303. PMCID:PMC4572914

L Xie, Y Qi, E Subashi, G Liao, L Miller DeGraff,A Jetten, GA Johnson, 4D MRI of polycystic kidneys from rapamycin-treated Glis3-deficient mice, NMR in Biomed 2015 28(5):546-54. PMCID:PMC4400264 Supplement

L Xie, R Dibb, GP Cofer,Wi Li, PJ Nicholls,GA Johnson, C Liu, Susceptibility tensor imaging of the kidney and its microstructural underpinnings, Magn Reson Med 73:1270-1281, 2015. PMCID:PMC4183741 Supplement

Proceedings of SPIE Medical Imaging, Feb 21-26, 2015, Orlando FL:

DP Clark, CT Badea: Spectral deblurring: an algorithm for high-resolution, hybrid spectral CT

DP Clark, C-L Lee, DG Kirsch,CT Badea, Rank-sparsity constrained, spectro-temporal reconstruction for retrospectively gated dynamic CT

DP Clark, CT Badea, Simultaneous imaging of multiple contrast agents using full-spectrum micro-CT

DP Clark, CT Badea, Rank-sparsity constrained atlas construction and phenotyping

R Dibb, Y Qi, C Liu, Magnetic susceptibility aniostropy of myocardium imaging by MRI reflects the anisotropy of mycardial filament α-helix polypeptide bonds, J Cardiovas Magn Reson 2015 Jul 16;17:60 PMCID: PMC4504227 Open Access

(CIVM data) S Gaffling, V Daum, S Steidl, A Maier, K Kostler, J Hornegger, A Gauss-Seidel iteration scheme for reference-free 3-D histological image reconstruction, IEEE Trans Med Imaging 34(2): 514-530, Feb 2015 PMCID: PMC42855547

M He, SH Robertson, SS Kaushik, MS Freeman, et al., Dose and pulse sequence considerations for hyperpolarized 129Xe ventilation MRI, Magn Reson Imaging. 2015 Sep;33(7):877-85. PMCID: PMC4466055

(CIVM service) JS House, H Li, LM DeGraff, G Flake, DC Zeldin, SJ London, Genetic variation in HTR4 and lung function: GWAS follow-up in mouse, The FASEB Journal 2015 Jan;29(1):323-35. PMCID:PMC4285547

GA Johnson, Magnetic resonance histology (Commentary), J Magn Reson Imaging 42:1-2, 2015. Available if have access to WIley Online Library


S Angeli, N Befera, Peyrat, E Calabrese, GA Johnson, C.Constantinides, A high-resolution cardiovascular magnetic JM resonance diffusion tensor map from ex-vivo C57BL/6 murine hearts, Journal of Cardiovascular Magnetic Resonance 16:77-91, 2014. PMCID: PMC4198699

DG Ashbrook, A Delprato, C Grellmann, M Klein, R Wetzel, RW Overall, A Badea, Transcript co-variance with Nestin in two mouse genetic reference populations identifies Lef1 as a novel candidate regulator of neural precursor cell proliferation in the adult hippocampus, Frontiers in Neuroscience 2014 Dec 12;8:418. PMCID: PMC4264481

JR Ashton, N Befera, D Clark, Y Qi, L Mao, HA Rockman, GA Johnson, CT Badea, Anatomical and functional imaging of myocardial infarction in mice using micro-CT and eXIA 160 contrast agent, Contrast Media and Mol Imag 9: 161-168, 2014. PMCID: PMC4017375

JR Ashton, DP Clark, EJ Moding, K Ghaghada, DG Kirsch, JL West, CT Badea. Dual energy micro-CT imaging of lung cancer in mice using gold and iodine nanoparticle contrast agents: a validation study. PLoS ONE 9(2):e881292014, 2014. PMCID: PMC3919743

CT Badea and D Panetta. High-Resolution CT for Small-Animal Imaging Research. In: Anders Brahme, editor-in-chief. Comprehensive Biomedical Physics, Vol 2, Amsterdam: Elsevier; 2014. p. 221-242.

CT Badea, NT Befera, DP Clark, Y Qi, GA Johnson, Dual-energy micro-CT imaging of pulmonary airway obstruction: correlation with micro-SPECT, Paper 9038-29, SPIE Medical Imaging, San Diego, CA, 15-20 Feb 2014. Proc SPIE Vol. 9038 90380U-1

NT Befera, CT Badea, GA Johnson, Comparison of 4D-microSPECT and microCT for murine cardiac function, Mol Imag Biol 16(2): 235-245, 2014. Supplement PMCID: PMC4061569

E Calabrese, F Du, RH Garman, GA Johnson, C Riccio, L Tong, JB, Long, Diffusion tensor imaging reveals white matter injury in a rat model of repetitive blast-induced traumatic brain injury, J Neurotrauma 2014 May 15;31(10):938-50. Supplement PMCID: PMC4012630

E Calabrese, A Badea, CL Coe, GR Lubach, MA Styner, GA Johnson, Investigating the tradeoffs between spatial resolution and diffusion sampling for brain mapping with diffusion tractography: Time well spent? Human Brain Mapping 2014 Nov;35(11):5667-85. PMCID: PMC4206697 Supplement

W Cao, W Li, H Han, SK O'Leary-Moore, KK Sulik, GA Johnson, C Liu, Prenatal alcohol exposure reduces magnetic susceptibility contrast and anisotropy in the white matter of mouse brains, Neuroimage 102, Part 2: 748–755; 2014. PMCID:PMC4252734

DP Clark, GA Johnson, CT Badea, Robust material decomposition for spectral CT, Proc. SPIE 9038, Medical Imaging 2014: Biomedical Applications in Molecular, Structural, and Functional Imaging, 90381A (March 13, 2014); http://www.doi.org/10.1117/12.2042546

DP Clark, GA Johnson, CT Badea, A multi-resolution approach to retrospectively-gated cardiac micro-CT reconstruction, Proc. SPIE 9033, Medical Imaging 2014: Physics of Medical Imaging, 903334 (March 19, 2014); http://www.doi.org/10.1117/12.2043044

RG Cutlip, MS Hollander, GA Johnson, BW Johnson, SA Friend, BA Baker. MR imaging of graded skeletal muscle injury in live rats. Environ Health Insights. 2014 Nov 20;8(Suppl 1):31-9. PMCID:PMC4241962

EDITOR'S PICK R Dibb, W Li, G Cofer, C Liu, Microstructural origins of gadolinium-enhanced susceptibility contrast and anisotropy, Magn Reson MedMagnetic Resonance in Medicine 72(6): 1702–1711, Dec 2014. PMCID: PMC4102673

MS Freeman, K Emami, B Driehuys, Characterizing and modeling the efficiency limits in large-scale production of hyperpolarized 129Xe, Physical Review A 9: 023406, 2014. PMCID: PMC4228970

E Gyengesi, E Calabrese, MC Sherrier, GA Johnson, G Paxinos, C Watson, Semi-automated 3D segmentation of major tracts in the rat brain: comparing DTI with standard histological methods, Brain Struct Funct 219(2):539-50, 2014. PMCID: PMC3815507

M He, SS Kaushik, SH Robertson,MS. Freeman, RS Virgincar, HP McAdams, B Driehuys, Extending semi-automatic ventilation defect analysis for hyperpolarized 129Xe ventilation MRI, Acad Radiol 21(12):1530-41, 2014. PMCID: PMC4254215

GA Johnson, E Calabrese, P Little, L Hedlund, Y Qi, A Badea, Quantitative mapping of trimethyltin injury in the rat brain using magnetic resonance histology, Neurotoxicology. 2014 Mar 11;42C:12-23. Supplement PMCID: PMC4053477

SS Kaushik, MS Freeman, SW Yoon, MG Liljeroth, JV Stiles, JE Roos, WM Foster, CR Rackley, HP McAdams, B Driehuys, Measuring diffusion-limitation with a perfusion-limited gas-hyperpolarized 129Xe gas-transfer spectroscopy in patients with idiopathic pulmonary fibrosis, J Appl Physiol 2014 Sep 15;117(6):577-85. PMCID: PMC4157168

CL Lee, H Min, N Befera, D Clark, Y Qi, S Das, GA Johnson, CT Badea, DG Kirsch. Assessing cardiac injury in mice with dual energy-microCT, 4D-microCT, and microSPECT imaging following partial-heart irradiation. Int'l J Radiation Oncol, Biol, Phys 88(3): 686-693, 2014. PMCID: PMC3985387

RJ Lipinski, HT Holloway, SK O’Leary-Moore, JJ Ament, SJ Pecevich, GP Cofer, F Budin, JL Everson, GA Johnson, KK Sulik, Characterization of subtle brain abnormalities in a mouse model of hedgehog pathway antagonist-induced cleft lip and palate, PLoS One 2014 Jul 21;9(7):e102603. PMCID: PMC4105496

EA Papp, TB Leergaard, E Calabrese, GA Johnson, Bjaalie JG, Waxholm Space atlas of the Sprague Dawley rat brain. Neuroimage 2014; 97C:374-386. PMCID: PMC4160085

SE Parnell, HE Holloway, LK Baker, MA Styner, KK Sulik. Dysmorphogenic effects of firstt trimester-equivalent ethanol exposure in mice: a magnetic resonance microscopy based study. Alcohol Clin Exp Res, 2014 Jul;38(7):2008-14. PMCID: PMC4107075



Figure chosen for cover

DP Clark, GA Johnson, CT Badea, A multi-resolution approach to retrospectively-gated cardiac micro-CT reconstruction, Paper 9033-111, 15-20 February 2014; Proc. SPIE 9033, Medical Imaging 2014: Physics of Medical Imaging, 903334 (March 19, 2014)

DP Clark, CT Badea, Micro-CT of rodents: state-of-the-art and future perspectives, Physica Medica: European Journal of Medical Physics 2014 Sep;30(6):619-34.PMCID: PMC4138257

DP Clark, CT Badea, Spectral diffusion: an algorithm for robust material decomposition of spectral CT data. Phys Med Biol. 2014 Oct 8;59(21):6445-6466. PMCID:PMC4210864

ZI Cleveland, RS Virgincar, Y Qi, SH Robertson, S Degan, B Driehuys, 3D MR imaging of impaired hyperpolarized 129Xe uptake in a rat model of pulmonary fibrosis, NMR Biomed, 27(12):1502-1514, 2014. PMCID: PMC4229493

C Constantinides, Magnetic Resonance Imaging: The Basics, CRC Press (Taylor and Francis): Boca Raton, FL, 2014, 235 pp (ISBN 13: 9781482217315), March 12, 2014 (foreward by GA Johnson)

C Constantinides (Editor), Latest Advances in Clinical and Pre-Clinical Cardiovascular Magnetic Resonance Imaging Vol 1, ISBN: 978-1-60805-807-5, Ebook, Bentham Science Publishers, Amsterdam, The Netherlands, 2014

T Pierce, E Calabrese, LE White, SD Chen, SR Platt, JM Provenzale, Segmentation of the canine corpus callosum using diffusion tensor imaging tractography, Am J Roentgenol AJR 202(1): W19-25, 2014. PMCID:PMC3983346






EMJ Simpson, FE Robles, CP Dall, K Glass, JD Simon, WS Warren, Near-infrared excited state dynamics of melanins: the effects of iron content, photo-damage, chemical oxidation, and aggregate size, J Phys Chem–A, 118(6):993-1003, 2014.PMCID: PMC399820

Subashi, KR Choudhury, GA Johnson, An analysis of the uncertainty and bias in DCE-MRI measurements using the spoiled gradient-recalled echo pulse sequence, Med Phys 41(3): 032301, 2014. PMCID: PMC3978390

L Xie, E Subashi, Y Qi, MA Knepper, GA Johnson, Four-dimensional MRI of renal function in the developing mouse, NMR in Biomedicine 27: 1094-1102, 2014. PMCID: PMC4134394 Supplement


BT Antonsen, Y Jiang, J Veraart, H Qu, HP Nguyen, J Sijbers, S von Hörsten, GA Johnson, TB Leergaard, Altered diffusion tensor imaging measurements in aged transgenic Huntington disease rats, Brain Struct Funct. 2013 May; 218(3): 767–778. PMCID: PMC3586769

I Argyridis, W Li, GA Johnson, C Liu. Quantitative magnetic susceptibility of the developing mouse brain reveals microstructural changes in the white matter. Neuroimage. 2013 Nov 22;88C:134-142. PMCID: PMC4031305

A Badea, GA Johnson, Magnetic resonance microscopy. Series: Studies in Health Technology and Informatics. 2013;185:153-84. IOS Press Ebooks, 978-1-61499-239-4 Abstract

C Badea, L Hedlund, GA Johnson, A LabVIEW platform for preclinical imaging using digital subtraction angiography and micro-CT, Journal of Medical Engineering Volume 2013, Article ID 581617, 1-13. PMCID: PMC4782637 Open access

R Bhavane, C Badea, KB Ghaghada, D Clark, D Vela, Anoosha Moturu, Ananth Annapragada, GA Johnson, JT Willerson, A Annapragada, Dual-energy computed tomography imaging of atherosclerotic plaques in a mouse model using a liposomal-iodine nanoparticle contrast agent, Circ Cardiovasc Imaging. 2013 Mar 1;6(2):285-94. PMCID: PMC3760185 Online supplement (from journal)

F Budin, M Hoogstoel, P Reynolds, M Grauer, SK O'Leary-Moore, I Oguz, Fully automated rodent brain MR image processing pipeline on a Midas server: from acquired images to region-based statistics, Frontiers in Neuroinformatics 2013 Aug 13;7:15. doi: 10.3389/fninf.2013.00015. eCollection 2013. PMCID: PMC3741535

E Calabrese, GA Johnson, C Watson, An ontology-based segmentation scheme for tracking postnatal changes in the developing rodent brain with MRI, Neuroimage, 67:375-384, 2013. PMCID: PMC3551262, Guide to MRH-based segmentation of all 26 structures available from the Neuroscience Lexicon wiki; Supplement

E Calabrese, A Badea, C Watson, GA Johnson, A quantitative magnetic resonance histology atlas of postnatal rat brain development with regional estimates of growth and variability, Neuroimage 71:196-206, 2013. PMCID: PMC3639493 Supplement

E Calabrese, GA Johnson, Diffusion tensor magnetic resonance histology reveals microstructural changes in the developing rat brain, Neuroimage 79:329-339, 2013. Supplement PMCID: PMC3690820

DP Clark, A Badea, GA Johnson, CT Badea, Constructing a 4D murine cardiac micro-CT atlas for automated segmentation and phenotyping applications, Proceedings of SPIE, paper 8669-60, 2013.

DP Clark, SM Johnston, GA Johnson, CT Badea, The effect of cross-scatter correction on the performance of dual energy micro-CT, Proceedings of SPIE, 8668, 86684T, 2013.

***Top 10 of Physics in Medicine and Biology's most-downloaded papers in 2013*** DP Clark, K Ghaghada, EJ Moding, DG Kirsch, CT Badea, In vivo characterization of tumor vasculature using iodine and gold nanoparticles and dual energy micro-CT, Phys Med Biol 58(6):1683-1704, 2013. Supplement PMCID: PMC3746324

medicalphysicsweb.org (Editor’s Picks: Feb 25, 2013)
Nanoprobes News Gold Nanoparticles and Iodine: Visualizing Cancer Growth for Better Diagnosis and Treatment

RM Davis, BL Viglianti, P Yarmolenko, J-Y Park, P Stauffer, D Needham, MW Dewhirst, A method to convert MRI images of temperature change into images of absolute temperature in solid tumours, Intl J Hypertherm 29(6): 569-581 Sep 2013. PMCID: PMC3779909

MS Freeman, ZI Cleveland, Y Qi, B Driehuys, Enabling hyperpolarized 129Xe MR spectroscopy and imaging of pulmonary gas transfer to the red blood cells in transgenic mice expressing human hemoglobin, Magn Reson Med 70(5):1192-1199 Nov 2013. PMCID: PMC4011488

SS Kaushik, MS Freeman, ZI Cleveland, J Davies, J Stiles, RS Virgincar, SH Robertson, M He, KT Kelly, WM Foster, HP McAdams, B Driehuys, Probing the regional distribution of pulmonary gas-exchange through single-breath, gas- and dissolved-phase 129Xe MR imaging, J Appl Physiol 115(6):850-60, 2013. PMCID: PMC3764620

LJ Kjonigsen, TB Leergaard, GA Johnson, MP Witter, JG Bjaalie, High resolution volumetric atlas of the rat hippocampal region and its subdivisions, Front Neuroinform, Conf Abstract: 5th INCF Congress of Neuroinformatics, Sept 10-12, 2013, Munich, Germany, Paper D06

W Li, C Liu, Comparison of magnetic susceptibility tensor and diffusion tensor of the brain, Journal of Neuroscience and Neuroengineering 2(5):431-440(10) 2013. PMCID: PMC4230339

C Liu, W Li, Imaging neural architecture of the brain based on its multipole magnetic response. NeuroImage 67 193-202, 2013. Supplementary data (Appendix C) access through Science Direct, PMCID: PMC3640835

N Mistry, C Badea, R Gullapalli, Z Vujaskovic, W D'Souza, WE-G-134-08: Extracting fractional regional ventilation in mice, Medical Physics 40: 513, 2013

EJ Moding, DP Clark, Y Qi, Y Li, Y Ma, K Ghaghada, GA Johnson, DG Kirsch, CT Badea, Dual-energy micro-computed tomography imaging of radiation-induced vascular changes in primary mouse sarcomas, Int J Radiat Oncol Biol Phys 85(5):1353-1359, 2013. PMCID: PMC3625949

P Pandit, SM Johnston, Y Qi, J Story, R Nelson, GA Johnson, The utility of microCT and MRI in the assessment of longitudinal growth of liver metastases in a preclinical model of colon carcinoma, Acad Radiology 20(4): 430-439, 2013. PMCID: PMC3602803

EA Papp, TB Leergaard, GA Johnson, JG Bjaalie, First generation Waxholm atlas of the Sprague-Dawley rat brain. Frontiers Neuroinform. Conference Abstract: 5th INCF Congress of Neuroinformatics. September 10-12, 2013, Munich, Germany, Paper P118

SE Parnell, HT Holloway, SK O'Leary-Moore, DB Dehart, B Paniaqua, I Oguz, F Budin, MA Styner, GA Johnson, KK Sulik. Magnetic resonance microscopy-based analyses of the neuroanatomical effects of gestational day 9 ethanol exposure in mice. Neurotoxicol Teratol 39:77-83 2013. PMCID: PMC3795920

BA Perez, AP Ghafoori, C-L Lee, SM Johnston, Y Li, JG Moroshek, Y Ma, S Mukherjee, Y Kim, CT Badea, DG Kirsch, Assessing the radiation response of lung cancer with different gene mutations using genetically engineered mice, Frontiers in Oncoogy, Vol 3, article 72, 2013 PMCID: PMC3613757

MJ Simpson, KE Glass, JW Wilson, PR Wilby, JD Simon, WS Warren, Pump-probe microscopic imaging of Jurassic-aged eumelanin, J Physical Chem Lett 4:1924-1927, 2013. PMCID: PMC3704187

PHYS.ORG Melanin from Jurassic-era mollusk could lead to new tool for cancer diagnosis — Jun 03, 2013 by Lisa Zyga

E Subashi, G Cofer, J MacFall, Y Qi, GA Johnson, A comparison of keyhole strategies for high spatial and temporal resolution 4D contrast-enhanced MRI in small animal tumor models, Med Phys 40(2): 022304, 2013. PMCID: PMC3562278

RS Virgincar, ZI Cleveland, SS Kaushik, MS Freeman, J Nouls, GP Cofer, S Martinez-Jimenez, M He, M Kraft, J Wolber, HP McAdams, B Driehuys, Quantitative analysis of hyperpolarized 129Xe ventilation imaging in healthy volunteers and subjects with chronic obstructive pulmonary disease, NMR in Biomedicine 26(4): 424–435, April 2013. PMCID: PMC3362235

Q Wei, Z Kang, F Diao, A Guidon, X Wu, L Zheng, L Li, X Guo, M Hu, J Zhang, C Liu, J Zhao, No association of ZNF804A rs1344706 with white matter integrity in schizophrenia: A tract-based spatial statistics study. Neuroscience Letters 4:532:64-69, 2013, PMCID: PMC4154480

PT Wei, D Leong, E Calabrese, L White, T Pierce, S Platt, J Provenzale. Diffusion tensor imaging of neural tissue organization: correlations between radiologic and histologic parameters. Neuroradiol J. 26(5):501-10, 2013 Nov. PMCID: PMC4001258

L Xie, MA Sparks, W Li, Y Qi, C Liu, TM Coffman, GA Johnson, Quantitative susceptibility mapping of kidney inflammation and fibrosis in Type 1 Angiotensin Receptor-deficient mice, NMR in Biomedicine 26(12): 1853-1863, 2013. Supplement PMCID: PMC3956055

2010 2012

A Badea, GA Johnson, Review article: Magnetic resonance microscopy, Analytical Cellular Pathology 35(4):205-227, 2012. PMCID:PMC22142643

A Badea, S Gewalt, BB Avants, JJ Cook, GA Johnson. Quantitative mouse brain phenotyping based on single and multispectral MR protocols. NeuroImage 63 1633-1645, 2012. PMCID: PMC3604698; Supplement

C Badea, KK Athreya, G Espinosa, DP Clark, AP Ghafoori, Y Yi, DG Kirsch, GA Johnson, A Annapragada, KB Ghaghada, Computed tomography imaging of primary lung cancer in mice using a liposomal-iodinated contrast agent, PLoS ONE 7(4): e34496, 2012 PMCID: PMC3317632

C Badea, X Guo, D Clark, S Johnston, C Marshall, C Piantadosi, Dual energy micro-CT of the rodent lung, American Journal of Physiology - Lung Cellular and Molecular Physiology 302(10):L1088-1097, 2012. PMCID: PMC3362256

CT Badea, X Guo, D Clark, SM Johnston, C Marshall, C Piantadosi. Lung imaging in rodents using dual energy micro-CT. Proceedings of SPIE 8317, 83171I, 2012

CT Badea, IN Stanton, SM Johnston, GA Johnson, MJ Therien. Investigations on x-ray luminescence CT for small animal imaging. Proceedings of SPIE 8313, 83130T, 2012, PMCID: PMC3515210

RC Bell, D Rogith, CW Johnson, CT Badea, KK Athreya, G Espinosa, D Clark, AP Ghafoori, Y Li, DG Kirsch, A Annapragada, K Ghaghada, Data analysis: Evaluation of nanoscale contrast agent enhanced CT scan to differentiate between benign and malignant lung cancer in mouse mode, American Medical Informatics Association (AMIA) Annual Symposium Proceedings Archive 2012:27-35, 2012, PMCID: PMC3540499

D Clark, GA Johnson, CT Badea, Denoising of 4D cardiac micro-CT data using median-centric bilateral filtration, Proceedings SPIE, Vol. 8314, 2012. PMCID: PMC3877307

D Clark, A Badea, Y Liu, GA Johnson, CT Badea. Registration-based segmentation of murine 4D cardiac micro-CT data using symmetric normalization. Phys Med Biol 57:6125-6145, 2012, PMCID: PMC3615410, Supplement

ZI Cleveland, HE Moller, LW Hedlund, JC Nouls, MS Freeman, Y Qi, B Driehuys, in vivo MR imaging of pulmonary perfusion and gas exchange in rats via continuous extracorporeal infusion of hyperpolarized 129Xe, PLoS ONE 7(2): e31306, 2012 PMCID: PMC3283644

C Constantinides, S Angeli, F Kossivas, P Ktorides, Underestimation of murine cardiac hemodynamics using invasive catheters: Errors, limitations, and remedies, Cardiovascular Engineering and Technology 3(2): 179-193, 2012

B Driehuys, S Martinez-Jimenez, ZI Cleveland, GM Metz, DM Beaver, JC Nouls, SS Kaushik, et al., Chronic Obstructive Pulmonary Disease: Safety and tolerability of hyperpolarized 129Xe MR imaging in healthy volunteers and patients, Radiology 262(1):279-289, Jan 2012 PMCID: PMC3244666 article highlighted in Diagnostic Imaging

Y Feng, R Davis, WS Warren. Accessing long-lived nuclear singlet states between chemically equivalent spins without breaking symmetry. Nature Physics. 8: 831-837, 2012. PMCID: PMC3596050

X Guo, SM Johnston, Y Qi, GA Johnson, CT Badea, 4D micro-CT using fast prospective gating, Physics in Medicine and Biology, 57(1): 257–271, 2012. PMCID: PMC3388603

X Guo, SM Johnston, GA Johnson, CT Badea, A comparison of sampling strategies, Proceedings of SPIE, 8313: 83133, 2 March 2012

GP Howles, Y Qi, SJ Rosenzweig, KR Nightingale, GA Johnson, Functional neuroimaging using ultrasonic blood-brain barrier disruption and manganese-enhanced MRI, Journal of Visualized Experiments (JoVE), e4055, DOI: 10.3791/4055, 2012. PMCID: PMC3476402

GA Johnson, B Adcock, M Sherrier, A Badea, Virtual Mouse Brain, iPad App Store, October, 2012

SM Johnston, CT Badea, A spectral calibration technique for x-ray CT, Proceedings of SPIE 8313: 831333, March 2012

SM Johnston, GA Johnson, CT Badea, Temporal and spectral imaging with micro-CT. Medical Physics, 39(8): 4943-4968, 2012. Supplement PMCID: PMC3416878

B Li, Y Cheng, J Liu, C Yi, AS Brown, H Yuan, T Vo-Dinh, MC Fischer, WS Warren. Direct optical imaging of graphene in vitro by nonlinear femtosecond laser spectral reshaping. Nano Lett. 2012 Nov 14;12(11):5936-5940. PMCID: PMC3672226

W Li, B Wu, AV Avram, C Liu, Magnetic susceptibility anisotropy of human brain in vivo and its molecular underpinnings. Neuroimage 2012; 59(3): 2088-2097. PMCID: PMC3254777

R Lipinski, P Hammond; S O'Leary-Moore; J Ament; S Pecevich; Y Jiang; F Budin; S Parnell; M Suttie; E Godin; J Everson; D Dehart; I Oguz; H Holloway; M Styner; GA Johnson; K Sulik, Ethanol-induced face-brain dysmorphology patterns are correlative and exposure-stage dependent, PLoS ONE 7(8): e43067, 2012. doi:10.1371/journal.pone.0043067 PMCID: PMC3425589 Press release

C Liu W Li, B Wu, Y Jiang, GA Johnson, 3D fiber tractography with susceptibility tensor imaging, Neuroimage 59(2):1290-1298, 2012. PMCID: PMC3235503

Y Loo, CL Grigsby, YJ Yamanaka, MK Chellappan, X Jiang, HQ Mao, KW Leong, Comparative study of nanoparticle-mediated transfection in different GI epithelium co-culture models, J Control Release. 2012 May 30;160(1):48-56. doi: 10.1016/j.jconrel.2012.01.041. PMCID: PMC3473091

D Perperidis, E Bucholz, GA Johnson, C Constantinides, Morphological studies of the murine heart based on probabilistic and statistical atlases. Comput Med Imaging Graph 36 (2012) 119-129, 2012. PMCID: PMC21820867

FE Robles, JW Wilson, MC Fischer, WS Warren. Phasor analysis for nonlinear pump-probe microscopy. Optics Express. 2012;20(15):17082-17092. OpticsInfoBase

P Samineni, A deCruz, TE Villafaña, WS Warren, MC Fischer, Pump-probe imaging of historical pigments used in paintings. Opt Lett. 2012;37(8):1310-1312.

P Samineni, B Li, JW Wilson, WS Warren, MC Fischer, Cross-phase modulation imaging. Opt Lett. 2012b;37(5):800-802. PMCID: PMC3371360

AC Thomas, SS Kaushik, J Nouls, EN Potts, DM Slipetz, WM Foster, B Driehuys, Effects of corticosteroid treatment on airway inflammation, mechanics, and hyperpolarized 3He MR imaging in an allergic mouse model, J Appl Physiol 112:1437-1444, 2012, PMCID: PMC3362235. Invited editorial about this article—“Editor’s Picks” Tilo Winkler, Jose G. Venegas, Are all aiways equal? J Appl Physiol 112:1437-1444, 2012. PMCID: PMC3362235

JM Ward, SA Elmore, JF Foley, Pathology methods for the evaluation of embryonic and perinatal developmental defects and lethality in genetically engineered mice. Vet Pathol 49(1):71-84, 2012 (uses CIVM figure)

JW Wilson, P Samineni, WS Warren, MC Fischer. Cross-phase modulation spectral shifting: nonlinear phase contrast in a pump-probe microscope. Biomed Opt Express. 2012;3(5):854-862. PMCID: PMC3342192

T Wu, MH Bae, M Zhang, R Pan, A Badea, A prior feature SVM-MRF based method for mouse brain segmentation. Neuroimage. 59(3):2298-306, 2012 Feb 1 PMCID: PMC3508710

L Xie, R Cianciol, B Hulette, H Won Lee, Y Qi, G Cofer, GA Johnson, Magnetic resonance histology of age-related nephropathy in the Sprague Dawley rat, Toxicologic Pathology 40(5):764-778, 2012 Supplement PMCID: PMC22504322

X Zhang, CT Badea, Highly efficient detection in fluorescence tomography of quantum dots using time-gated acquisition and ultrafast pulsed laser, Proc of SPIE, 7896: 78962W 2012. PMCID: PMC3046870


Evolution News & Views, January 2, 2012 Peering into the Chrysalis: An Interview with Dr. Richard Stringer

Originally Published Aug 20, 2012 By AD CRABLE, Outdoor Trails Staff Writer: Local scientist unravels mysteries inside a butterfly chrysalis, Intelligence Journal, Lancaster New Era, Aug 21, 2012


Figure chosen for issue cover

GA Johnson, E Calabrese, A Badea, G Paxinos, C Watson, A multidimensional magnetic resonance histology atlas of the Wistar rat brain, Neuroimage 62(3):1848–1856, 2012 PMCID: PMC3408821 Supplement


CT Badea, LW Helund, J Cook, BR Berridge, GA Johnson, Micro-CT imaging assessment of dobutamine-induced cardiac stress in rats, J Pharma Tox Methods 63(1):24-29, 2011. PMCID: PMC2916074

CT Badea, SM Johnston, Y Qi, K Ghaghada, GA Johnson, Dual-energy micro-CT imaging for differentiation of iodine- and gold-based nanoparticles temporal and spectral reconstruction algorithms for x-ray CT, Proc. SPIE 7961, 79611X, 201.1

CT Badea, K Ghaghada, G Espinosa, L Strong, A Annapragada, Multi-modality PET-CT imaging of breast cancer in an animal model using nanoparticle x-ray contrast agent and 18F-FDG, Proc. SPIE 7965, 796511, 2011

CT Badea, SM Johnston, Y Qi, GA Johnson, 4D micro-CT for cardiac and perfusion applications with view under sampling, Phys Med Biol 56(11): 3351–3369, 2011. PMCID: PMC3180888

B Bolon, RH Garman, HJ Gundersen, GA Johnson, W Kaufmann, G Krinke, PB Little, SL Makris, RD Mellon, Sulik KK, Jensen K. Continuing Education Course #3: Current Practices and Future Trends in Neuropathology Assessment for Developmental Neurotoxicity Testing, Toxicol Path 39(1): 289-293, 2011. PMCID: PMC3508706

DM Bowden, GA Johnson, L Zaborsky, WD. Green, E Moore, A Badea, MF Dubach, FL Bookstein. A symmetrical Waxholm canonical mouse brain for NeuroMaps, J Neurosci Methods 195(2): 170-175, 15, 2011, PMCID: PMC3103134

C Constantinides, Case Study: MRI coil improvement for cardiac imaging in mice, in REMCOM Inc., 2/16/2011 Newsletter, State College, PA, web site

C Constantinides, R Mean, BJ Janssen, Effects of isoflurane anesthesia on the cardiovascular function of the C57BL/6 mouse, ILAR Journal 52:e21-e31, 2011. PMCID: PMC3508701

KB Ghaghada, CT Badea, L Karumbaiah, N Fettig, RV Bellamkonda, GA Johnson, A Annapragada, Evaluation of tumor microenvironment in an animal model using a nanoparticle contrast agent in computed tomography imaging, Academic Radiology 18(1):20-30, 1, 2011, PMCID: PMC3016875

M Hawrylycz, RA Baldock, A Burger, T Hashikawa, GA Johnson, et al. Digital atlasing and standardization in the mouse brain, PLoS Computational Biology 7(2): e1001065, 2011. PMCID: PMC3033370

Y Jiang, GA Johnson, Microscopic diffusion tensor atlas of the mouse brain, Neuroimage 56(3): 1235-1243, 2011 Supplement PMCID:PMC3085633

GA Johnson, A Badea, Y Jiang, Quantitative neuromorphometry using magnetic resonance histology, Toxicologic Pathology 39(1):85-91, 2011, PMCID: PMC3073322

SM Johnston, CT Badea, Temporal and spectral reconstruction algorithms for x-ray CT, Proc. of SPIE 7961, 79611U, 2011.

SS Kaushik, ZI Cleveland, GP Cofer, G Metz, D Beaver, J Nouls, M Kraft, J Wolber, KT Kelly, W Auffermann, HP McAdams, B Driehuys, Diffusion weighted imaging of hyperpolarized 129Xe in patients with chronic obstructive pulmonary disease, Magn Reson Med 65(4):1154-1165, 2011. PMCID: PMC3351270

C Liu, W Li; GA Johnson; B Wu, High-field (9.4 T) MRI of brain dysmyelination, Neuroimage 56(3):930-938, 2011. PMCID: PMC3085608

TE Matthews, IR Piletic, MA Selim, MJ Simpson, WS Warren. Pump-probe imaging differentiates melanoma from melanocytic nevi. Sci Transl Med. 2011;3(71):71ra15. PMCID: PMC3371363

TE Matthews, JW Wilson, S Degan, MJ Simpson, JY Jin, JY Zhang, et al. In vivo and ex vivo epi-mode pump-probe imaging of melanin and microvasculature. Biomed Opt Express. 2011;2(6):1576-1583. PMCID: PMC3114225

NCI Cancer Bulletin, Imaging Boot Camp for Cancer Researchers (participation by Dr. Cristian Badea)

J Nouls, M Fanarjian, L Hedlund, A constant-volume ventilator and gas recapture system for hyperpolarized gas MRI of mouse and rat lungs, Concepts in Magn Reson Part B: Magn Reson Eng, 39B(2): 78–88, 2011. Supplement PMCID: PMC3103138

SK O’Leary-Moore, SE Parnell, RJ Lipinski, KK Sulik, Magnetic resonance-based imaging in animal models of Fetal Alcohol Spectrum Disorder, Neuropsychology Review 21(2): 167-185, 2011. PMCID: PMC3445286

P Pandit, Y Qi, KF King, GA Johnson, Reduction of artifacts in T2-weighted PROPELLER in high-field preclinical imaging, Magn Reson Med 65(2):538-543, 2011. PMCID: PMC3026877

RA Peterson (co-chair), KL Gabrielson (co-chair), GA Johnson, MG Pomper, RW Coatney, CT Winkelmann, Continuing Education Course #1: Non-Invasive Imaging as a Problem-Solving Tool and Translational Biomarker Strategy in Toxicologic Pathology, Toxicol Path 39(1):267-272, 2011. PMCID: PMC3519422

M Poot, A Badea, RW Williams, MJ Kas, Identifying human disease genes through cross-species gene mapping of evolutionary conserved processes, PLoS One, May 4;6(5):e18612, 2011, PMCID: PMC3087714

S Rajagopal, J Kovacs, C Badea, GA Johnson, HA Rockman, CA Piantadosi, RJ Lefkowitz, Beta-arrestins regulate signaling by bone morphogenetic protein type ii receptor in pulmonary arterial hypertension, J Am Coll Cardiol, April 5, 2011; 57: E2046, ACC Special Session, Young Investigators Award Competition: Molecular and Cellular Cardiology, April 3, 2011

AC Thomas, JC Nouls, B Driehuys, JW Voltz, B Fubara, J Foley, JA Bradbury, DC Zeldin, Ventilation defects observed with hyperpolarized 3He magnetic resonance imaging in a mouse model of acute lung injury, Am J Respir Cell Mol Biol 44(5):648-54, 2011, Supplement, PMCID: PMC3095984

JW Wilson, P Samineni, WS Warren, MC Fischer. Cross-phase modulation spectral shifting: nonlinear phase contrast in a pump-probe microscope. Biomed Opt Express. 2012;3(5):854-862. PMCID: PMC3342192

X Zhang, CT Badea, Highly efficient detection in fluorescence tomography of quantum dots using time-gated acquisition and ultrafast pulsed laser, Proc SPIE, Jan 23;7896. pii: 78962W, 2011, PMCID: PMC3046870

X Zhang, C Badea, G Hood, A Wetzel, Y Qi, J Stiles, GA Johnson, High-resolution reconstruction of fluorescent inclusions in mouse thorax using anatomically guided sampling and parallel Monte Carlo computing, Biomedical Optics Express 2(9): 2449-2460, 1 September 2011. PMCID: PMC3184855

W Zheng, ZI, Cleveland, HE Möller, B Driehuys. Gradient-induced longitudinal relaxation of hyperpolarized noble gases in the fringe fields of superconducting magnets used for MR, J Magn Reson 208(2):284-290, 2011. PMCID: PMC3026078


A Badea, GA Johnson, JL Jankowsky, Remote sites of structural atrophy predict later amyloid formation in a mouse model of Alzheimer's disease, Neuroimage 50(2): 416–427, 2010. Supplement PMCID: PMC2823970

CT Badea, SM Johnston, E Subashi, Y Qi, LW Hedlund, GA Johnson, Lung perfusion imaging in small animals using 4D micro-CT at heartbeat temporal resolution, Medical Physics 37(1): 54-62, Jan. 2010. PMCID: PMC2801733

MH Bae, T Wu, R Pan, Mix-ratio sampling: Classifying multiclass imbalanced mouse brain images using support vector machine, Expert Systems with Applications 37(7): 4955-4965, July 2010. PMCID: PMC2748869

RT Branca, Z Cleveland, B Fubara, CSSR Kumar, RR Maronpot, C Leuschner, WS Warren, B Driehuys, Molecular MRI for sensitive and specific detection of lung metastases, Proc Natl Acad Sci U S A. Feb 23;107(8):3693-3697, 2010. PMCID: PMC2840507

C Brinegar, SS Schmitter, NN Mistry, GA Johnson, Z-P Liang, Improving temporal resolution of pulmonary perfusion imaging in rats using the PSF model, Magn Reson Med 64:1162–1170, 2010. PMCID: PMC2946504

E Bucholz, K Ghaghada, Y Qi, S Mukundan, HA Rockman, GA Johnson, Cardiovascular phenotyping of the mouse heart using a 4D radial acquisition and liposomal Gd-DTPA-BMA, Magn Reson Med Apr 63(4):979-987, 2010. Supplemental data PMCID:PMC 2852272

ZI Cleveland, GP Cofer, G Metz, D Beaver, J Nouls, SS Kaushik, M Kraft, J Wolber, KT Kelly, HP McAdams, B Driehuys, Hyperpolarized 129Xe MR imaging of alveolar gas uptake in humans, PLoS ONE 5(8): e12192, 2010. PMCID: PMC2922382

C Constantinides, S Gkagkarellis, S Angeli, G Cofer, A novel spiral radiofrequency coil for high field mouse cardiac imaging, Remcom Inc. web site Conference Proceedings, 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC'10), Buenos Aires, Argentina, September 1-4, 2010. Conf Proc IEEE Eng Med Biol Soc. 2010;1:6657-61

C Constantinides, Case Study: MRI coil improvement for cardiac imaging in mice, REMCOM newsletter

EA Godin, SK O’Leary-Moore, AA Kahn, JJ Ament, SE Parnell, DB Dehart, BW Johnson, GA Johnson, MS Styner, KK Sulik, Magnetic resonance microscopy defines ethanol-induced brain abnormalities in prenatal mice: effects of acute insult on gestational day 7; Alcohol Clin Exp Res. Jan;34(1):98-111, 2010. PMCID: PMC3506027

GP Howles, Y Qi, GA Johnson, Ultrasonic disruption of the blood-brain barrier enables in vivo functional mapping of the mouse barrel field cortex with manganese-enhanced MRI, Neuroimage 50(4):1464-1471, 2010, PMCID: PMC2859893

GP Howles, KF Bing, Y Qi, SJ Rosenzweig, KR Nightingale, GA Johnson, Contrast-enhanced in vivo magnetic resonance microscopy of the mouse brain enabled by non-invasive opening of the blood-brain barrier with ultrasound, Magn Reson Med, 64(4):995-1004. 2010. PMCID: PMC2950102

Y Jiang, GA Johnson, Microscopic diffusion tensor imaging of the mouse brain, NeuroImage, Apr 1;50(2):465-471, 2010. Supplement PMCID: PMC2826147

GA Johnson, A Badea, J Brandenburg, G Cofer, B Fubara, S Liu, J Nissanov, Waxholm Space: An image-based reference for coordinating mouse brain research, Neuroimage, 53(2): 365-372, 2010, Supplement PMCID: PMC2930145

Photonics.com, Online Atlas Shows Brain in Sharp Detail

Science Daily: Major Step Taken Toward an Open and Shared Digital Brain Atlasing Framework (Feb. 8, 2011)

SciMed - Neuroscience TS-SI NEWS SERVICE, 27 October 2010: Detailed Images Upgrade Online Mouse Brain Atlas

SM Johnston, BA Perez, DG Kirsch, CT Badea, Phase-selective image reconstruction of the lungs in small animals using micro-CT; Medical Imaging 2010: Physics of Medical Imaging, Proc of SPIE 7622, 76223G-1-9, 2010, PMCID: PMC3018736

SM Johnston, GA Johnson, CT Badea, GPU-based iterative reconstruction with total variation minimization for micro-CT, Proc. SPIE 7622, 762238, 2010. If have access, available through SPIE Digital Library

Lipinski RJ, Godin EA, O’leary-Moore SK, Parnell SE, Sulik KK, Genesis of teratogen-induced holoprosencephaly in mice, Am J Med Genetics, Part C 154C: 29-42, 2010, PMCID: PMC2914459

RJ Lipinski, C Song, KK Sulik, et al. Cleft lip and palate results from Hedgehog signaling antagonism in the mouse: Phenotypic characterization and clinical implications. Birth Defects Res A Clin Mol Teratol 88(4):232-240, 2010. PMCID: PMC2922848

NN Mistry, Y Qi, LW Hedlund, GA Johnson, Ventilation / perfusion imaging in a rat model of airway obstruction, Magn Reson Med 63 (3):728–735, 2010. PMCID: PMC2832088

NN Mistry, A Thomas, SS Kaushik, GA Johnson, B Driehuys, Quantitative analysis of hyperpolarized 3He ventilation changes in mice challenged with Methacholine, Magn Reson Med 63:658–666, 2010. PMCID: PMC2872792

SK O'Leary-Moore, SE Parnell, EA Godin, DB Dehart, JJ Ament, AA Khan, GA Johnson, MA Styner, KK Sulik, Magnetic resonance microscopy-based analyses of the brains of normal and ethanol-exposed fetal mice. Birth Defects Res A Clin Mol Teratol 88(11):953-64, 2010. PMCID: PMC3445267

P Pandit, Y Qi, K King, GA Johnson, Multi-shot PROPELLER for high-field preclinical MRI, Magn Reson Med, 64(1):47-53, 2010. PMCID: PMC3391749

A Petiet, GA Johnson, Active Staining of Mouse Embryos for Magnetic Resonance Microscopy. In: Hewitson Tim D & Darby Ian A (editors), Histology Protocols (Series: Methods in Molecular Biology), Springer-Humana Press. Totowa, NJ. USA, 611:141-149, (230 p) 2010. PMCID: PMC2811431


A Badea, RW Williams, GA Johnson, Genetic dissection of the mouse brain using high-field magnetic resonance microscopy, Neuroimage. 45(4):1067-1079, 2009. PMCID: PMC2667384

A Badea, GA Johnson, R Williams, Genetic dissection of the mouse CNS using magnetic resonance microscopy, invited paper: Current Opinion in Neurology 22:379-386, 2009, PMCID: PMC2734144

CT Badea, SM Johnston, E Subashi, Y Qi, LW Hedlund, GA Johnson, Lung perfusion imaging in small animals using 4d micro-CT at heartbeat temporal resolution, Medical Physics 37(1): 54-62, 2010. PMCID: PMC2801733

M Hyeok Bae, R Pan, T Wu, A Badea, Automated segmentation of mouse brain images using extended MRF, Neuroimage 46(3): 717-725, 2009. PMCID: PMC2748869

K Frinkley Bing, GP Howles, Y Qi, ML Palmeri, KR. Nightingale, Blood-brain barrier disruption using a diagnostic ultrasound scanner and DefinityŽ in mice, Ultrasound in Medicine and Biology, 35:1298-1308, 2009. PMCID: PMC2729364

Z Cleveland, H Moeller, L Hedlund, B Driehuys, Continuously infusing hyperpolarized 129Xe into flowing aqueous solutions using hydrophobic gas exchange membranes, The Journal of Physical Chemistry B, 113(37): 12489-12499, 2009. PMCID: PMC2747043

B Driehuys, H Moeller, J Pollaro, Z Cleveland, LW Hedlund, Pulmonary perfusion and xenon gas exchange in rats: MR imaging with intravenous injection of hyperpolarized 129Xe , Radiology 252(2): 386-393, 2009. PMCID: PMC2753782

GP Howles, JC Nouls, Y Qi, GA Johnson, Rapid production of specialized animal handling devices using computer-aided design and solid freeform fabrication, Journal of Magnetic Resonance Imaging, 30(2):466-471, 2009. Supplemental data PMCID: PMC2746045

GP Howles, KB Ghaghada, Y Qi, S Mukundan, Jr., GA Johnson, High-resolution magnetic resonance angiography in the mouse using a nanoparticle blood-pool contrast agent, accepted/in press, Magn Reson Med 62(6): 1447-1456, 2009. PMCID: PMC2787905

M Lin, CT Marshall, Y Qi, SM Johnston, CT Badea, CA Piantadosi, GA Johnson, Quantitative blood flow measurements in the small animal cardiopulmonary system using digital subtraction angiography, Medical Physics 36(11) 5347-5358, 2009. PMCID: PMC2746045

A Mackenzie-Graham SK Tiwari-Woodruff, G Sharma, C Aguilar, KT Vo, LV Strickland, L Morales, B Fubara, M Martin, RE Jacobs, GA Johnson, AW Toga, RR Voskuhl, Purkinje cell loss in experimental autoimmune encephalomyelitis, NeuroImage, 48(4): 637-652, 2009. PMCID: PMC2754586

SE Parnell, SK O'Leary Moore, EA Godin, DB Dehart, BW Johnson, GA Johnson, MA Styner, KK Sulik, Magnetic resonance microscopy defines ethanol-induced brain abnormalities in prenatal mice: effects of acute insult on gestational day 8, Alcoholism: Clinical and Experimental Research 33(4): 1001-1011, 2009. PMCID:PMC2748865

E Samei, RS Saunders, CT Badea, KB Ghaghada, LW Hedlund, Y Qi, H Yuan, RC Bentley, S Mukundan, Jr., GA Johnson, Micro-CT imaging of breast tumors in rodents using a liposomal, nanoparticle contrast agent, Intl J Nanomed 4: 277-282, 2009. PMCID: PMC2789439

J Song, Yi Liu, SL Gewalt, G Cofer, GA Johnson, QH. Liu, Least-square NUFFT methods applied to 2-D and 3-D radially encoded MR image reconstruction, IEEE Trans Biomed Eng, 56(4):1134-1142, 2009. PMCID: PMC2734456

AC Thomas, EN Potts, BT Chen, DM Slipetz, WMFoster, B Driehuys. A robust protocol for regional evaluation of methacholine challenge in mouse models of allergic asthma using hyperpolarized (3)He MRI, NMR Biomed. 22(5): 502-515, 2009, PMCID: PMC2714734

X Zhang, C Badea, Effects of sampling strategy on image quality in noncontact panoramic fluorescence diffuse optical tomography for small animal imaging, Optics Express 17(7): 5125-5138, 2009. PMCID: PMC2664524

X Zhang, C Badea, M Jacob, GA Johnson, Development of a noncontact 3-D fluorescence tomography system for small animal in vivo imaging, Proc of SPIE 7191 Feb 16, 2009. PMCID: PMC2706514

X Zhang, CT Badea, GA Johnson, Three-dimensional reconstruction in free-space whole-body fluorescence tomography of mice using optically reconstructed surface and and atlas anatomy, J Biomed Optics 14(6):064010, 2009. PMCID: PMC2801728


C Badea, E Schreibmann, T Fox, A registration-based approach for cardiac micro-CT using combined prospective and retrospective gating, Medical Physics, 35(4): 1170-1179, 2008. PMCID:PMC2312091

CT Badea, AW Wetzel, SM Pomerantz, N Mistry, D Nave, GA Johnson, Left ventricle volume measurements in cardiac micro-CT: the impact of radiation dose and contrast agent, Computerized Medical Imaging and Graphics, 32: 239-250, 2008. PMCID: PMC2276250

CT Badea, M Drangova, DW Holdsworth, GA Johnson, In vivo small-animal imaging using micro-CT and digital subtraction angiography, Phys Med Biol 53(19): R319-R350, 2008. PMCID: PMC2663796

E Bucholz, J Song, GA Johnson, I Hancu, Multi-spectral imaging with three-dimensional rosette trajectories, Magn Reson Med, 59(3): 581-589, 2008. PMCID: PMC2746043

E Bucholz, K Ghaghada, Y Qi, S Mukundan, GA Johnson, Four-dimensional MR microscopy of the mouse heart using radial acquisition and liposomal gadolinium contrast agent, Magn Reson Med, 60(1):111-118, 2008. PMCID: PMC2746046 Supplemental data

AF Chen, CM Davies, MD Lin, B Fermor, Oxidative DNA damage in osteoarthritic porcine articular cartilage, Journal of Cellular Physiology, J Cell Physiol. 2008 Dec;217(3):828-33, 2008. PMCID: PMC2575799

B Driehuys, J Nouls, A Badea, A Petiet, E Bucholz, K Ghagada, L Hedlund, Small-animal imaging with magnetic resonance microscopy, invited paper, ILAR Journal Noninvasive Bioimaging of Laboratory Animals 49(1):35-53, 2008. PMCID: PMC2770253

B Driehuys, J Pollaro, GP Cofer, In vivo MRI using real-time production of hyperpolarized 129Xe, Magn Reson Med, 60(1):14-20, 2008. PMCID: PMC2548276

MM Goddeeris, S Rho, A Petiet, CL Davenport, GA Johnson, EN Meyers, J Klingensmith, Intracardiac septation requires hedgehog-dependent cellular contributions from outside the heart, Development 135(10):1887-95, May 2008. Supplemental data PMCID: PMC2746050

S Johnston, GA Johnson, C Badea, Geometric calibration for a dual tube/detector micro-CT system, Medical Physics 35(5): 1820-1829, May 2008. PMCID: PMC2809730

MD Lin, L Ning, CT Badea, GA Johnson, A high-precision contrast injector for small animal x-ray digital subtraction angiography, IEEE Trans on Biomed Eng, 55(3): 1082-1091, 2008. PMCID: PMC18334400

MD Lin, G Toncheva, G Nguyen, S Kim, CAnderson-Evans, GA Johnson, TT Yoshizumi. Application of MOSFET detectors in small animal digital subtraction angiography (DSA) dosimetry, Radiation Research, 170: 260-263, 2008. PMCID: PMC2533764

NN Mistry, J Pollaro, J Song, GA Johnson, Pulmonary perfusion imaging in the rodent lung using dynamic contrast-enhanced MRI, Magn Reson Med, 59(2):289-297, Jan 28, 2008. PMCID: PMC2738602

JC Nouls, MG Izenson, HP Greeley, GA Johnson, A superconducting volume coil for magnetic resonance microscopy of the mouse brain, Journal of Magnetic Resonance Imaging 191(2): 231-238, 2008. PMCID: PMC2361158

M Oldham, H Sakhalkar, T Oliver, GA Johnson, M Dewhirst, Optical clearing of unsectioned specimens for three-dimensional imaging via optical transmission and emission tomography. J Biomed Opt. Mar-Apr;13(2):021113, 2008. PMCID: PMC2746042

AE Petiet, MH Kaufman, MM Goddeeris, J Brandenburg, SA Elmore, GA Johnson, High-resolution magnetic resonance histology of the embryonic and neonatal mouse: a 4D atlas and morphologic database, Proc Natl Acad Sci U S A. 105(34):12331-12336, 2008. Supplemental data PMCID: PMC2527911

AA Sharief, A Badea, AM Dale, GA Johnson, Automated segmentation of the actively stained mouse brain using multi-spectral MR microscopy, NeuroImage 39( 1): 136-1451, 2008. PMCID: PMC2139901

S Shofer, C Badea, Y Qi, E Potts , W Foster, GA Johnson, A microCT analysis of murine lung recruitment in bleomycin-induced lung injury, Journal of Applied Physiology, 105(2): 669-677, 2008. PMCID: PMC2519942

LW Hedlund and T Gluckman, Basics of Small Animal Handling for In Vivo Imaging, book chapter in: Textbook of Molecular Imaging in Oncology, Martin Pomper, Juri Gelovani (Eds), Chapter 24, pp. 377-390, in: Molecular Imaging in Oncology, Martin Pomper, Juri Gelovani (Eds,), Informa Healthcare, New York, NY, October 2008.


A Badea, A Ali Sharief, AM Dale, GA Johnson, Morphometric analysis of the C57BL/6J mouse brain, NeuroImage 37(3): 683–693, 2007, PMCID: PMC2176152

A Badea, PJ Nicholls, GA Johnson, WC Wetsel, Neuroanatomical phenotypes in the Reeler mouse, NeuroImage 34(4): 1363-1374, February 15, 2007. Supplemental data PMCID: PMC1945208

CT Badea, L. Hedlund, MD Lin, JS Boslego Mackel, E Samei, GA Johnson, Tomographic digital subtraction angiography for lung perfusion estimation in rodents, Medical Physics 34(5): 1546-1555, 2007. PMCID: PMC2682230

CT Badea, L. Hedlund, JF Boslego Mackel, L Mao, HA Rockman, GA Johnson, Cardiac micro-CT for morphological and functional phenotyping of MLP null mice, Molecular Imaging, 6(4):261-268, 2007. PMCID: PMC2671027

B Driehuys, LW Hedlund, Imaging techniques for small animal models of pulmonary disease: MR microscopy, Toxicologic Pathology 35(1): 49-58, 2007. PMCID: PMC2747380

B Driehuys, J Walker, J Pollaro, GP Cofer, N Mistry, D Schwartz, GA Johnson, 3He MRI in mouse models of asthma, Magn Reson Med 58(5):893-900, 2007. PMCID: PMC2746053

KB Ghaghada, KHJ Bockhorst, S Mukundan, Jr, AV Annapragada, PA Narayana, High-resolution vascular imaging of the rat spine using liposomal blood pool MR agent, American Journal of Neuroradiology, 28(1):48-53, 2007. PMCID: PMC1773015

Y Jiang, JM Guccione, MB Ratcliffe, EW Hsu, Transmural heterogeneity of diffusion anisotropy in the sheep myocardium characterized by MR diffusion tensor imaging, American Journal of Physiology-Heart and Circulatory Physiology, 293(4): H2377-2384, 2007. Free article from journal


GA Johnson, A Ali-Sharief, A Badea, J Brandenburg, G Cofer, B Fubara, S Gewalt, LW Hedlund, L Upchurch, High-throughput morphologic phenotyping of the mouse brain with magnetic resonance histology, NeuroImage 37(10: 82-89, 2007. Supplement PMCID: PMC1994723

M Nahrendorf, C Badea, L Hedlund, J-L Figueiredo, D Sosnovik, GA Johnson, R Weissleder, High resolution imaging of murine myocardial infarction with delayed enhancement and cine micro-CT, Am J Physiol Heart Circ Physiol 292:3172-3178, 2007. Supplement PMCID: PMC2680216

A Petiet, LW Hedlund, GA Johnson, Staining methods for magnetic resonance microscopy of the rat fetus, J Magn Reson Imag, 25:1192-1198, 2007. PMCID: PMC2747382

AM Ponce, BLViglianti, D Yu, PS Yarmolenko, CR Michelich, J Woo, MB Bally, MW Dewhirst, Magnetic resonance imaging of temperature-sensitive liposome release: drug dose painting and antitumor effects, J National Cancer Institute 99(1): 53-63, January 3, 2007. Oxford journals

HE Rice, EW Hsu, H Sheng, DA Evenson, AJ Freemerman, KM Safford, JM Provenzale, DS Warner, GA Johnson, SPIO-labeling and transplantation of adipose-derived stem cells in MCAO-injured mice, AJR Am J Roentgenol. 188(4):1101-8, April 2007. Oxford journal

S Shofer, C Badea, S Auerbach, D Schwartz, GA Johnson, A microCT-based method for the measurement of pulmonary compliance in healthy and bleomycin-exposed mice, Experimental Lung Research 33:169–183, 2007. PMCID: PMC2677683

J Song, QH Liu, GA Johnson, CT Badea, Sparseness prior based iterative image reconstruction for retrospectively gated cardiac micro-CT, Medical Physics 34(11): 4476-4483, 2007. PMCID: PMC2366112

AW Wetzel, CT Badea, SM Pomerantz, N Mistry, D Navea, GA Johnson, Measurement and modeling of 4D live mouse heart volumes from CT time series, Videometrics IX, (Eds. J-Angelo Beraldin, Fabio Remondino, Mark R. Shortis, Proc. of SPIE Vol. 6491, 64910J-1–64910J-7, 2007.


A Ali Sharief, GA Johnson, Enhanced T2 contrast for MR histology of the mouse brain, Magn Reson Med 56(4):717–725, 2006. pdf

AWARD WINNER "Best Publication of 2006" SE chapter of American Association of Physicists in Medicine: CT Badea, LW Hedlund, MD Lin, JF Boslego, GA Johnson, Tumor imaging in small animals with a combined micro-CT / micro-DSA system using iodinated conventional and blood pool contrast agents, Contrast Media and Molecular Imaging, 1(4):153-164, July/August 2006. pdf

CT Badea, E Bucholz, LW Hedlund, HA Rockman, GA Johnson, Imaging methods for morphological and functional phenotyping of the rodent heart, Toxicologic Pathology 34(1):111-117, 2006. free text from the journal or pdf

JE Bowsher, DM DeLong, TG Turkington, RJ Jaszczak, Aligning emission tomography and MRI images by optimizing the emission-tomography image reconstruction objective function, IEEE Transactions on Nuclear Science, 53(3): 1248-1258, 2006. pdf

B Driehuys, Toward molecular imaging with xenon MRI, Science 5798: 432-433, October 20, 2006. pdf

B Driehuys, GP Cofer, J Pollaro, J Boslego Mackel, LW Hedlund, GA Johnson, Imaging alveolar-capillary gas transfer using hyperpolarized 129Xe MRI, PNAS, 103(48): 18278-18283, 2006. PMCID: PMC1838742 or pdf

TA Jaffe , RC Nelson , GA Johnson , ER Lee , TT Yoshizumi , CR Lowry, AB Bullard, DM DeLong, EK Paulson, Optimization of multiplanar reformations from isotropic data sets acquired with 16-detector row helical CT scanner, Radiology 238(1):292-299, Jan 2006. pdf

MD Lin, E Samei, CT Badea, TT Yoshizumi, GA Johnson, Optimized radiographic spectra for small animal digital subtraction angiography, Medical Physics, 33(11): 4249-4257, November 2006. pdf

J Mi, S Sarraf-Yazdi, X Zhang, Y Cao, MW Dewhirst, CD Kontos, CY Li, BM Clary. A comparison of anti-angiogenic therapies for the prevention of liver metastases, Journal of Surgical Research, 131(1): 97-104, March 2006.

NN. Mistry, EW Hsu, Retrospective distortion correction for 3D MR diffusion tensor microscopy using mutual information and Fourier deformations, Magn Reson Med 56 (2):310-316, 2006. PMCID: PMC3373165

S Mukundan, Jr., KB Ghaghada, CT Badea, CY Kao, LW Hedlund, JM Provenzale, GA Johnson, E Chen, RV Bellamkonda, A Annapragada, A liposomal nanoscale contrast agent for preclincal CT in mice, Am J Roentgenology, 186:300–307, February 2006. free from the journal

Mark Oldham, Harshad Sakhalkar, Tim Oliver, Ying Min Wang, John Kirkpatrick, Yiting Cao, Cristian Badea, G. Allan Johnson, Mark Dewhirst, Three-dimensional imaging of xenograft tumors using optical computed and emission tomography, Medical Physics 33(9): 3193-3202, 2006. PMCID: PMC1616943

BL Viglianti, AM Ponce, CR Michelich, D Yu, SA Abraham, L Sanders, PS Yarmolenko, T Schroeder, JR MacFall, DP Barboriak, OM Colvin, MB Bally, MW Dewhirst, Chemodosimetry of in-vivo tumor liposomal drug concentration using MRI, Magn Reson Med 56(5): 1011–1018, 2006. Wiley Online Library

Y Wang, F Yuan, Delivery of viral vectors to tumor cells: Extracellular transport, systemic distribution, and strategies for improvement. Annals of Biomedical Engineering 34(1): 114-127, 2006.

H Yuan, T Schroeder, JE Bowsher, LW Hedlund, T Wong, MW Dewhirst, Intertumoral differences in hypoxia selectivity of the PET imaging agent 64Cu(II)-Diacetyl-Bis(N4-Methylthiosemicarbazone), Journal of Nuclear Medicine, J Nucl Med 47:989–998, 2006. free from journal or pdf


AA Ali, AM Dale, A Badea, GA Johnson, Automated segmentation of neuroanatomical strructures in multispectral MRM of the mouse brain. NeuroImage 27(2):425-35, August 2005. pdf

C Badea, B Fubara, LW Hedlund, GA Johnson, 4D cardiac micro-CT of the mouse heart, Molecular Imaging, 4(2): 110-116, (April-June) 2005. pdf

BT Chen, AT Yordanov, GA Johnson, Ventilation-synchronous MR microscopy of pulmonary structure and ventilation in mice, Magn Reson Med 53(1): 69-75, 2005. pdf

Bin Chen, Edward W Hsu, Noise removal in MR diffusion tensor imaging, Magn Reson Med 54(2):393-407, 2005. pdf

M Cyr, MG Caron, GA Johnson, A Laakso, Magnetic resonance imaging at microscopic resolution reveals subtle morphological changes in a mouse model of dopaminergic hyperfunction, NeuroImage, 26: 83-90,2005. pdf

LW Hedlund, GA Johnson, Morphology of the small animal lung using MR microscopy, Proceedings of the American Thoracic Society 2(6): 481-483, 2005. pdf

Y Jiang, EW Hsu, Accelerating MR diffusion tensor imaging via filtered reduced encoding projection reconstruction, Magn Reson Med 53(1): 93-102, 2005. pdf

W Maï, CT Badea, CT Wheeler, LW Hedlund, GA Johnson, Effects of breathing and cardiac motion on the spatial resolution in microscopic imaging of rodents, Magn Reson Med 53(4): 858-865, 2005. pdf

MW Tengowski, P Sutovsky, LW Hedlund, DJ Guyot, JE Burkhardt, WE Thompson, M Sutovsky, GA Johnson, Reproductive cytotoxicity is predicted by MR microscopy and confirmed by ubiquitin–proteasome immunohistochemistry in a theophylline-induced model of rat testicular and epididymal toxicity, Microscopy and Microanalysis 11(04): 300-312, 2005. Cambridge journals

JC Walker, JM Guccione, Y Jiang, P Zhang, AW Wallace, EW Hsu, MB Ratcliffe, Helical myofiber orientation after myocardial infarction and left ventricular surgical restoration in sheep. J Thorac Cardiovasc Surg. 129(2):382-90, Feb 2005.


C Badea, R Gordon, Experiments with the nonlinear and chaotic behaviour of the multiplicative algebraic reconstruction technique (MART) algorithm for computed tomography, Phys Med Biol, 49(8): 1455-1474, 2004. IOP Science

C Badea, L. Hedlund, GA Johnson, Micro-CT with respiratory and cardiac gating, Med Phys 31(12) 3324-3329, 2004. pdf

ACS Brau, LW Hedlund, GA Johnson, Cine magnetic resonance microscopy of the rat heart using cardiorespiratory-synchronous projection reconstruction imaging,  J Magn Res Img 20: 31-38, 2004. pdf

BT Chen, GA Johnson, Dynamic lung morphology of methacholine-induced heterogeneous bronchoconstriction, Magn Reson Med, 52(5): 1080-1086, 2004. pdf

C Gilchrist, J Xia, L Setton, E Hsu, High-resolution determination of soft tissue deformation using MRI and first-order texture correlation. IEEE-Trans Med Imaging, 23(5): 546-553, May 2004. pdf

Y Jiang, K Pandya, O Smithies, EW Hsu, Three-dimensional diffusion tensor microscopy of fixed mouse hearts, Magn Reson Med 52:453–460, 2004. pdf

RR Maronpot, RC Sills, GA Johnson, Applications of MR microscopy, Toxicol Pathol, 32 (Suppl. 2):42–48, 2004. pdf

WP Segars, BMW Tsui, EC Frey, GA Johnson, SS Berr, Development of a 4-D digital mouse phantom for molecular imaging research, Mol Imag Biol, 6(3): 149-159, 2004. pdf

RC Sills, DL Morgan, DW Herr, PB Little, NM George, TV Ton, NE Love, RR Maronpot, GA Johnson, Contribution of MR microscopy in the 12-Week neurotoxicity evaluation of carbonyl sulfide in Fischer 344 rats, Toxicol Path, 32:501–510, 2004. pdf

W Taylor, E Hsu, R Krishnan, J MacFall, Diffusion tensor imaging: background, potential and utility in psychiatric research, Biol Psych 55: 201-207, 2004. Elsevier Full Text Article

BL Viglianti, SA Abraham, CR Michelich, PS Yarmolenko, JR MacFall, MB Bally, MW Dewhirst, In-vivo monitoring of tissue pharmacokinetics of liposome/drug using MRI: illustration of targeted delivery, Magn Reson Med 51:1153-1162, 2004. pdf

ER Ward, LW Hedlund, WC Kurylo, CT Wheeler, GP Cofer, MW Dewhirst, LB Marks, Z Vujaskovic, Proton and hyperpolarized Helium MR imaging of radiation-induced lung injury in rats,, Int J Rad Oncol Biol Phys 58(5): 1562–1569, 2004. pdf

X Zhang, M Tengowski, L Fasulo, S Botts, SA Suddarth, Measurement of fat/water ratios in rat liver using 3D three-point Dixon MRI, Magn Reson Med 51:697-702, 2004. pdf



BT Chen, ACS Brau, GA Johnson, Measurement of regional lung function in rats using hyperpolarized 3He dynamic MRI, Magn Reson Med 49: 78-88, 2003. pdf

AK Gupta, RC Nelson, GA Johnson, EK Paulson, DM Delong, TT Yoshizumi. Optimization of 8-element multi-detector row helical CT technology for evaluation of the abdomen. Radiol 227(3): 739-45, 2003. pdf

X Zhang, TM Yelbuz, GP Cofer, MA Choma, ML Kirby, Improved preparation of chick embryonic samples for MR microscopy, Magn Reson Med 49(6): 1192-1195, 2003. pdf

TM Yelbuz, KL Waldo, X Zhang, M Zdanowica, J Parker, TL Creazzo, GA Johnson, ML Kirby, Myocardial volume and organization are changed by failure of addition of secondary heart field myocardium to the cardiac outflow tract, Developmental Dynamics 228: 152-160, 2003. pdf

TM Yelbuz, X Zhang, MA Choma , HA Stadt, M Zdanowicz, GA Johnson, ML Kirby, Approaching cardiac development in three dimensions by magnetic resonance microscopy, Circulation 108: e154-e155, December 2, 2003. pdf


KJL Burg, M Delnomdedieu, RJ Beiler, CR Culberson, KG Greene, CR Halberstadt, WD Holder, Jr., AB Loebsack, WD Roland, GA Johnson. Application of MR microscopy to tissue engineering: a polylactide model, J Biomed Res 61(3): 380-390, 2002. pdf

ACS Brau, CT Wheeler, LW Hedlund, GA Johnson, The fiber-optic stethoscope: a cardiac monitoring and gating system for magnetic resonance microscopy. Magn Reson Med 47, 314-321, 2002. pdf

PJ Gareau, AC Wymore, GP Cofer, GA Johnson, Imaging inflammation: direct visualization of perivascular cuffing in EAE by MR microscopy, JMRI 16(1): 28-36, 2002. pdf

LW Hedlund, GA Johnson, Mechanical ventilation for imaging the small animal. ILAR J 43(3): 159-174, 2002. pdf

GA Johnson, GP Cofer, SL Gewalt, LW Hedlund, Morphologic phenotyping with magnetic resonance microscopy: the visible mouse. Radiology 222, 789-793, 2002 Supplement - Interactive Image Viewers pdf

GA Johnson, GP Cofer, B Fubara, SL Gewalt, LW Hedlund, RR Maronpot, Magnetic resonance histology for morphologic phenotyping, JMRI 16: 423-429, 2002. pdf

GA Johnson, The Imaging Tower of Babel, guest editorial, Biophotonics International, p 15, Sept 2002. pdf

AL Muzikant, EW Hsu, PD Wolf, CS Henriquez, Region specific modeling of cardiac muscle: comparison of simulated and experimental potentials. Ann Biomed Eng, 30(7): 867-883, 2002. pdf

HE Möller, XJ Chen, B Saam, KD Hagspiel, GA Johnson, TA Altes, EE de Lange, H Kauczor. MRI of the lungs using hyperpolarized noble gases, Magn Reson Med 47: 1029–1051, 2002. link to article

BL Viglianti, SA Abraham, JR MacFall, MB Bally, MW Dewhirst, In-vivo monitoring of real time tissue pharmacokinetics of liposome/drug concentration using MRI: illustration of targeted delivery, Radiology 225: 647-648, Suppl. S Nov 2002. access through Wiley Online Library

SP Wolfe, EW Hsu, LM Reid, JM Macdonald. A novel multi-coaxial hollow fiber bioreactor for adherent cell types. Part 1: hydrodynamic studies, Biotech and Bioengineering, 77: 83-90, 2002. pdf


EW Hsu, CS Henriquez, Myocardial fiber orientation mapping using reduced-encoding diffusion tensor imaging, J Cardiovascular Magn Reson  3(4): 339-347, 2001.

EW Hsu, DL Buckley, JD Bui, SJ Blackband, JR Forder, Two-component diffusion tensor MRI of isolated perfused hearts. Magn Reson Med 45: 1039-1045, 2001.Wiley Online Library

GA Johnson, GP Cofer, LW Hedlund, RR Maronpot, SA Suddarth, Registered (1)H and (3He MR microscopy images of the lung. Magn Reson Med 45: 365-370, 2001. Wiley Online Library

SJ Kelly, M Delnomdedieu, MI Oliverio, LD Williams, MGP Saifer, MR Sherman, TM Coffman, GA Johnson, MS Hershfield, Diabetes insipidus in uricase-deficient mice: a model for evaluating therapy with poly(ethylene glycol)-uricase. J Am Soc Nephrol 12: 1001-1009, 2001. free text through journal

HE Moller, LW Hedlund, XJ Chen, MR Carey, MS Chawla, CT Wheeler, GA Johnson, Measurements of hyperpolarized gas properties in the lung, Part III: 3He T1. Magn Reson Med 45: 421-430, 2001. access through Wiley Online Library


H Benveniste, KR Kim, LW Hedlund, JW Kim, AH Friedman, Cerebral hemorrhage and edema following brain biopsy in rats: significance of mean arterial pressure, J Neurosurg 92: 100-107, 2000.

H Benveniste, KR Kim, L Zhang and GA Johnson,  MR microscopy of the C57BL mouse brain, NeuroImage 11: 601-611, 2000. Elsevier Full Text Article

MS Chawla, XJ Chen, GP Cofer, LW Hedlund, MB Kerby, T Ottoboni, GA Johnson, Hyperpolarized 3He microspheres as a novel vascular signal source for MRI, Magn Reson Med 43: 440-445, 2000. access through Wiley Online Library

XJ Chen, LW Hedlund, HE Möller, MS Chawla, RR Maronpot, GA Johnson, Detection of emphysema in rat lungs using magnetic resonance measurements of 3He diffusion, PNAS 97: 11478-11481, 2000. PMCID: PMC17225

LW Hedlund, GP Cofer, SJ Owen, GA Johnson, MR-compatible ventilator for small animals: computer-controlled ventilator for proton and noble gas imaging, Magn Reson Imag 18: 753-759, 2000. pdf

LW Hedlund, HE Möller, XJ Chen, MS Chawla, GP Cofer, GA Johnson, Mixing oxygen with hyperpolarized 3He for small-animal lung studies, NMR in Biomed 13: 202-206, 2000. pdf

DS Lester, PS Pine, M Delnomdedieu, JN Johannessen, GA Johnson, Virtual neuropathology: three-dimensional visualization of lesion due to toxic insult, Toxicol Pathol 28: 100-104, 2000. if have access through Sage Publications

AC Nugent, GA Johnson, T1rho imaging using magnetization-prepared projection encoding, Magn Reson Med 43: 421-428, 2000. Wiley Online Library

MI Oliverio, M Delnomdedieu, CF Best, P Li, M Morris, GA Johnson, O Smities, TM Coffman, Abnormal water metabolism in mice lacking the type 1A receptor for angiotensin II, Am J Physiol 278: F15-F82, 2000. access through journal

R Weissleder, A Moore, U Mahmood, R Bhorade, H Benveniste, EA Chiocca, JP Basilion, In vivo MR imaging of transgene expression, Nature Medicine, 6, 351-5, 2000. access through journal


H Benveniste, G Einstein, K Kim, C Hulette, GA Johnson, Detection of neuritic plaques in Alzheimer's Disease by MR microscopy, PNAS USA, 96: 14079-14084, 1999. PMC article

H Benveniste, H Qiu, LW Hedlund, PC Hüttemeier, SM Steele, GA Johnson, In vivo diffusion-weighted MR microscopy of rat spinal cord: effect of ischemia and intrathecal hyperbaric 5% lidocaine, Regional Anesthesiology and Pain Medicine, 24 (4): 311-318, 1999. Science Direct

XJ Chen, HE Möller, MS Chawla, GP Cofer, B Driehuys, LW Hedlund, GA Johnson,  Spatially resolved measurements of hyperpolarized gas properties in the lung in vivo. Part I: diffusion coefficient, Magn Reson Med 42: 721-728, 1999.Wiley Online Library

XJ Chen, HE Möller, MS Chawla, GP Cofer, B Driehuys, LW Hedlund, JR MacFall, GA Johnson, Spatially resolved measurements of hyperpolarized gas properties in the lung in vivo. Part II: T2*, Magn Reson Med 42: 729-737, 1999. Wiley Online Library

LW Hedlund, MS Chawla, XJ Chen, GP Cofer, HE Möller, GA Johnson, MR microscopy in small animal models of pulmonary disease, Euro Radiol, 9, 32, 1999.

EW Hsu, LA Setton, Diffusion tensor microscopy of the intervertebral disc anulus fibrosus, Magn Reson Med 41(5): 992-9, 1999. Wiley Online Library

DS Lester, JN Johannessen, PS Pine, GN McGregor, GA Johnson, Virtual neuropathology: A new approach to preclinical pathology using MR imaging microscopy, Spectroscopy 14: 17-22, 1999.

DS Lester, RC Lyon, GN McGregor, RT Engelhardt, LC Schmued, GA Johnson, JN Johannessen, 3-dimensional visualization of lesions in rat brain using MR microscopy, NeuroReport 10(4): 737-741,1999.

LA Setton, F Guilak, EW Hsu, TP Vail, Biomechanical factors in tissue engineered meniscal repair, Clin Ortho & Related Res 367 Suppl: S254-72, 1999.

M Thorne, AN Salt, JE DeMott, MM Henson, OWJ Henson, SL Gewalt, Cochlear fluid space dimensions for six species derived from reconstrcutions of three-dimensional MR images, The Laryngoscope, 109, 1661-1668, 1999. Wiley Online Library

M Viallon, GP Cofer, SA Suddarth, HE Möller, XJ Chen, MS Chawla, LW Hedlund, Y Cremillieux, GA Johnson, Functional MR microscopy of the lung with hyperpolarized 3He, Magn Reson Med 41: 787-792, 1999. Wiley Online Library


H Benveniste, H Qiu, LW Hedlund, F D´Ercole, GA Johnson, Spinal cord neural anatomy in rats examined by in vivo magnetic resonance microscopy. Regional Anesthesia 23(6): 589-599, 1998.

MS Chawla, XJ Chen, HE Möller, GP Cofer, CT Wheeler, LW Hedlund, GA Johnson, In vivo MR vascular imaging using laser-polarized 3He microbubbles. Proceedings of the National Academy of Sciences USA 95, 10832-10835, 1998. PMC article

XJ Chen, MS Chawla, LW Hedlund, HE Moller, JE MacFall, GA Johnson: MR microscopy of lung airways with hyperpolarized 3He. Magn Reson Med 39(1):79-84, 1998. Wiley Online Library

XJ Chen, Chawla MS, Hedlund LW, Moller HE, Johnson GA, Hyperpolarized 3He NMR lineshape measurements in the live guinea pig lung. Magn Reson Med 40, 61-65, 1998. Wiley Online Library

M Delnomdedieu, LW Hedlund, RR Maronpot, GA Johnson, Magnetic resonance microscopy and histopathology: comparative approach of bromobenzene-induced hepatoxicity in the rat. Hepatology. 27, 526-532, 1998. Wiley Online Library

EW Hsu, LW Hedlund, JR MacFall, fMRI of rat somatosensory cortex: effects of hyperventilation. Magn Reson Med 40(3): 421-426, 1998.Wiley Online Library

EW Hsu, SB Reeder, JR MacFall, Single-shot, variable flip-angle slice-selective excitation with 4 gradient-modulated adiabatic half-passage segments. Magn Reson Med. 40(2), 334-340, 1998. Wiley Online Library

EW Hsu, AL Muzikant, SA Matulevicius, RC Penland, CS Henriquez, Magnetic resonance myocardial fiber orientation mapping with direct histological correlation. AJP: Heart and Circulatory Physiology 274,1627-1634, 1998. if have access, available through journal

GY Huang, A Wessels, BR Smith, KK Linask, JL Ewart, CW Lo, Alteration in connexin 43 gap junction gene dosage impairs conotruncal heart development. Developmental Biology 198, 32-44, 1998. Elsevier full text article

GA Johnson, LW Hedlund, JR MacFall, A new window into the lung. Physics World 35-38, November 1998.

HE Moller, XJ Chen, MS Chawla, B Driehuys, LW Hedlund, GA Johnson, Signal dynamics in magnetic resonance imaging of the lung with hyperpolarized noble gases. Journal of Magnetic Resonance, 135: 133-143, 1998.

H Qiu, LW Hedlund, MR Neuman, CR Edwards, RD Black, GP Cofer, GA Johnson. Measuring the progression of foreign body reaction to silicone implants using in vivo MR microscopy. IEEE Transactions on Biomedical Engineering 45, 921-927, 1998. IEEE XPlore

BR Smith, MD Shattuck, LW Hedlund, GA Johnson, Time-course imaging of rat embryos in utero with magnetic resonance microscopy. Magn Reson Med, 39(4): 673-677, 1998. Wiley Online Library

SA Suddarth, A method for matching high-temperature superconducting resonators used for NMR signal pickup at 400 MHz. IEEE Transactions in Biomedical Engineering, 45 (8): 1061-1066. 1998. IEEE XPlore

X Zhou, ZP Liang, SL Gewalt, GP Cofer, PC Lauterbur, GA Johnson, A fast spin echo technique with circular sampling. Magn Reson Med 39: 23-27, 1998.


SE Hurlston, GP Cofer, GA Johnson: Optimized receiver coils for increased SNR in MR microscopy. Intl J of Imag Systems and Tech 8:277-284, 1997.

GA Johnson, XJ Chen, G Cates, GP Cofer, B Driehuys, LW Hedlund, W Happer, B Saam, MD Shattuck, J Swartz: Dynamics of magnetization in hyperpolarized gas MRI of the lung. Magn Reson Med  38: 66-71, 1997. access through Wiley Online Library

GA Johnson, H Benveniste, RT Engelhardt, H Qiu, LW Hedlund: “Magnetic Resonance microscopy in basic studies of brain structure and function.” In: Imaging Brain Structure and Function: Emerging Technologies in the Neurosciences, Eds. D Lester, C Felder, EN Lewis, NY Academy of Sciences, New York, NY: pp 139-148, 1997. access through Wiley Online Library

JS MacFall, GA Johnson: Root form and function meshed by MRI. Plant Physiol 114(3):20002 Suppl. July, 1997.

H Qiu, LW Hedlund, SL Gewalt, H Benveniste, TM Bare, GA Johnson: Progression of a focal ischemic lesion in rat brain during treatment with a novel Glycine/NMDA antagonist: an in vivo 3D diffusion-weighted MR microscopy study. JMRI 7(4):739-744, 1997. access through Wiley Online Library

H Qiu, GP Cofer, LW Hedlund, GA Johnson: Automated feedback control of body temperature for small animal studies with MR microscopy.  IEEE Trans Biomed Eng 44:1107-1113, 1997. pdf

MD Shattuck, RP Behringer, J Georgiadis, GA Johnson: Convection and flow in porous media, I: Visualization by magnetic resonance imaging. J Fluid Mechan 332:215-245, 1997.

MD Shattuck, SL Gewalt, GH Glover, LW Hedlund, GA Johnson: MR microimaging of the lung using volume projection encoding. Magn Reson Med 38(6):938-942, 1997. access through Wiley Online Library

RM Vandemark, ME Fay, FR Porter, GA Johnson: Digital image-intensifier radiography at a level 1 trauma center. AJR 168(4):944-946, 1997. access through journal

C Zimmer, SCJ Wright, RT Engelhardt, GA Johnson, XO Breakefield, R Weissleder: Tumor cell endocytosis (TCE) imaging facilitates delineation of the glioma-brain interface. Exper Neurol 143:61-69, 1997. access through Elsevier full text article